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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTAAGTAGGAGAAATGCCTTCTCATATGAGGTGGGGGTACAAATGGTTGAGATATACAATGAACAAGTCCGTGATCTGCTATCAAATGATATTGCACAAAgaagatatcctttttgtactatcactttagcttttatttcattactcttattgtcttcaaaatattcgtatatgaaacattgatggtattcttgcatttgggaaaatattttttccttaacataaag

Basic information

species Zea mays
transcript GRMZM2G173700_T02
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G173700_T01 (Zea mays), 5'ss of exon 12
lower sequence: LOC_Os05g44560.1 (Oryza sativa), 5'ss of exon 15
----------------------------------CTAAGTAGGAGAAATGCCTTCTCATATGAGGTGGGGGTACAAATGGTTGAGATATACAATGAACAAGTCCGTGATCTGCTATCAAATGATATTGCACAAAgaagatatcctttttgtactatcactttagcttttatttc--attactcttattgtcttcaaaatattcgtatatgaaacattgatggtattcttgcatttgggaaaatattttttccttaacataaag
                                  ||||||||||||||||| ||||| ||||||||||| || || |||||||||||||||||||||||||| || ||||| || ||||||||||||||||| | | ||||||||||||     || |||| |  | | |||||  ||||   || | ||    |   | || ||                                                          
TTACAGGGCTTTAAATGATTTATTTGATATCTCACTAAGTAGGAGAAATGCTTTCTCTTATGAGGTGGGAGTTCAGATGGTTGAGATATACAATGAACAAgtgcgggatcttctgtcaaatgatattgcacagaaacgatatccttttt----cat-acttaaattgtcatttctaattatatttctggtacctatgtttttagt----------------------------------------------------------

upper sequence: GRMZM2G173700_T01 (Zea mays), 5'ss of exon 12
lower sequence: GLYMA05G35130.1 (Glycine max), 5'ss of exon 13
---------CTAAGTAGGAGAAATGCCTTCTCATATGAGGTGGGGGTACAAATGGTTGAGATATACAATGAACAAGTCCGTGATCTGCTATCAAATGATATTGCACAAAgaagatatcctttttgtactatcactttagcttttatttcattactc---ttattgtcttcaaaatattcgtatatgaaacattgatggtattcttgcatttgggaaaatattttttccttaacataaag------
           ||||||   ||    | |    || ||| | || || ||||||||||||||||| ||||| |||||||||||  || ||  ||  |||  | | | || |||||||||||||| |  |     ||||   | |  ||| || |     || |  ||||| |  | ||    |        ||  |   || |   || |||||| | |   |   ||| |||  || |      
AAGATTGCCACAAGTAGAGAAAGCCTCATAGACTACGAGATTGGAGTTCAAATGGTTGAGATATATAATGAGCAAGTCCGTGACTTGTTAATAACAGATGgttctccaaaaagatatcctttttttcattaacttttaatatgttattctttgcatggattttcttcttctactttttttctttctctgatttccttaaatgcacacacttgggatattgactcgacctcaaccaaagggcttag

upper sequence: GRMZM2G173700_T01 (Zea mays), 5'ss of exon 12
lower sequence: Vv17s0000g03700.t01 (Vitis vinifera), 5'ss of exon 14
---------CTAAGTAGGAGAAATGCCTTCTCATATGAGGTGGGGGTACAAATGGTTGAGATATACAATGAACAAGTCCGTGATCTGCTATCAAATGATATTGCACAAAgaagatatcctttttgtactatcactttagcttttatttcattactcttattgtcttcaaaatattcgtatatgaaacattgatggtattcttgcatttgggaaaatattttttccttaacataaag
         | ||| |||||||   | ||    |||||  | || || ||||||||||| ||||||||||||||||| |||||| | ||||||| ||||| | | |||| || |||||||| |    ||||   |||   || | |  ||| |       |||    |  |||| | | | |     ||| ||  |  ||||   |||  |                         
GAGATCACTCAAAGCAGGAGAAGCTCATTTATGTATGAAATTGGAGTTCAAATGGTTGAAATATACAATGAACAAGTGCGTGATTTACTATCAAGTGATAgttctcaaaaaaaatatccttct----ctattcattttcattctttggcataa----agatgtaaaaaggatatccttctct-----attcattttcatcttctgttttcgct-----------------------

upper sequence: GRMZM2G173700_T01 (Zea mays), 5'ss of exon 12
lower sequence: Vv02s0025g03480.t01 (Vitis vinifera), 5'ss of exon 16
CTAAGTAGGAGAAATGCCTTCTCATATGAGGTGGGGGTACAAATGGTTGAGATATACAATGAACAAGTCCGTGATCTGCTATCAAATGATATTGCACAAAgaagatatcctttttgtactatcactttagcttttatttca---ttactcttattgtcttcaaaatattcgtatatgaaacattgatg---------gtattcttgcatttgggaaaatattttttccttaacataaag
                              || || || ||||||||||||||||| ||||||||||| || ||| |||| || | ||||  | | || | ||||||||||||     |  ||| || |    || |||||   ||| |  |   || |    || | | |  | |  ||| ||  ||          | | |||  | | |    |  || | | | |||        
------------------------------GTCGGTGTCCAAATGGTTGAGATATATAATGAACAAGTGCGAGATTTGCTCTCGAGTGATGGTTCTCAGAAAAGATATCCTTT-----CCTTCAATTCAATACTTgtttcaaatttatttgtgaggtttcagtaacagttgggtttttaactttattgcttgactggatgtacttctaatggatggatgatatatcctttattgc----

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31353200|gb|CD437557.1|CD437557
EST:     GATATACAATGAACCTGTCCGTGATCTGCTATCAAATGATATTGCACAAA                         GAAGACTTGGGATTTGGAACACTTCTCAACCCAATGGGCTTGTTGTTCCAG
genomic: GATATACAATGAACAAGTCCGTGATCTGCTATCAAATGATATTGCACAAAgaagatatcc ... taacataaagAAACACTTGGGATTTGGAACACTTCTCAACCCAATGGGCTTGTTGTTCCAG
EST: gi|31354629|gb|CD438986.1|CD438986
EST:     GATATACAATGAACTTGTCCGTGATCTGCTATCAAATGATATTGCACAAA                         GAAGACTTGGGATTTGGAACACTTCTCAACCCAATGGGCTTGTTGTTCCAG
genomic: GATATACAATGAACAAGTCCGTGATCTGCTATCAAATGATATTGCACAAAgaagatatcc ... taacataaagAAACACTTGGGATTTGGAACACTTCTCAACCCAATGGGCTTGTTGTTCCAG