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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCCTCGCTGGTTGCTGAAGCAAGAGGTCCCAAAAGTTGTCAAGTCTATCAACAGGCAGTTACGTGAAAAATCAATCAAGACAAAGgtcagtccttcagttttcctgcaattcatggttctggaattgtaagtctgattatattcctaacattttccag

Basic information

species Zea mays
transcript GRMZM2G168629_T01
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G168629_T04 (Zea mays), 5'ss of exon 12
lower sequence: LOC_Os02g07120.1 (Oryza sativa), 5'ss of exon 12
CCCTCGCTGGTTGCTGAAGCAAGAGGTCCCAAAAGTTGTCAAGTCTATCAACAGGCAGTTACGTGAAAAATCAATCAAGACAAAGgtcagtccttcagttttcctgcaattcatggttctggaattgtaagtctgattatattcctaacattttccag
|||| | ||||||||||| ||||| || || || |||||||| || ||||| |||||||| |||||||||||||||||||||||||| ||  |||        |||||| |||||  | | ||  ||    ||||||| ||    ||| ||||  |||
CCCTAGATGGTTGCTGAAACAAGAAGTACCTAAGGTTGTCAAATCCATCAATAGGCAGTTGCGTGAAAAATCAATCAAGACAAAGgtgagctctttga-----ctgcaaatcatgtctatcgacctg--gttctgattttaga--taaaattt--cag

upper sequence: GRMZM2G168629_T04 (Zea mays), 5'ss of exon 12
lower sequence: LOC_Os02g07340.1 (Oryza sativa), 5'ss of exon 9
---------------CCCTCGCTGGTTGCTGAAGCAAGAGGTCCCAAAAGTTGTCAAGTCTATCAACAGGCAGTTACGTGAAAAATCAATCAAGACAAAGgtcagtccttcagttttcctgca-attcatggttctgg----aattgtaagtctgattatat-tcctaacattttccag---------------------
               |||| | ||||||||||| ||||| || || || |||||||| || ||||| |||||||| |||||||||||||||||||||||||| ||  |||    |      ||  |  || |  ||||     ||| ||  |   |||  |  |   | |||| ||                        
CCTTTTGCTTTTCAGCCCTAGATGGTTGCTGAAACAAGAAGTACCTAAGGTTGTCAAATCCATCAATAGGCAGTTGCGTGAAAAATCAATCAAGACAAAGgtgagctctttgactgcaaatcatgtctatcgacctggttctgattttagataaaatttcaggttggagcattctctgtattgaaggagcttgttgttgt

upper sequence: GRMZM2G168629_T04 (Zea mays), 5'ss of exon 12
lower sequence: GLYMA07G40230.2 (Glycine max), 5'ss of exon 13
CCCTCGCTGGTTGCTGAAGCAAGAGGTCCCAAAAGTTGTCAAGTCTATCAACAGGCAGTTACGTGAAAAATCAATCAAGACAAAGgt--cagtccttcagttttcctgcaattcatggttctggaattgtaagtctgattatattcctaacattt-tccag
 ||||| |||||| |||||||||| ||  | ||  ||||||| ||||| || |||||||| ||||| ||||| ||||||||||||||   |||| |  |   ||  |  | || ||  |  |  |||| |       |||  |         | | | |||
TCCTCGATGGTTGTTGAAGCAAGAAGTGTCGAAGATTGTCAAATCTATAAATAGGCAGTTGCGTGAGAAATCTATCAAGACAAAGgtagtagtcatcaaaagttgat--agttgattttgattaaattatctccagaatttaagcatctttgtctatgcag

upper sequence: GRMZM2G168629_T04 (Zea mays), 5'ss of exon 12
lower sequence: GLYMA17G00570.1 (Glycine max), 5'ss of exon 12
CCCTCGCTGGTTGCTGAAGCAAGAGGTCCCAAAAGTTGTCAAGTCTATCAACAGGCAGTTACGTGAAAAATCAATCAAGACAAAGgt--cagtccttcagttttcctgcaattcatggttctggaattgtaagtctgattatattcctaaca--ttttccag
 ||||| |||||| |||||||||| ||  ||||  ||||||| ||||| || |||||||| ||||| ||||| || |||||||||||   |||| |  |   ||  |  |||| ||        |||| |    | |||| ||  | | |     ||| |||
TCCTCGATGGTTGTTGAAGCAAGAAGTGTCAAAGATTGTCAAATCTATAAATAGGCAGTTGCGTGAGAAATCTATTAAGACAAAGgtagtagtcatcaaaagttgat--aattgatttcgactaaattatct-ccagattttaagcatcattgtctttgcag