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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGACATGGAGCTTGTAAGAGTTCTTCCTAGTGTAGGAGAGGAAGTCAATGTTGCATGTTTTCATCCTTCCCCTGGATCAGGTCTTGTTTATGGGACTAAGgtgagtagcaagttaagatcagcgacaaaaatggaataaatatatgctctgctgatgcttctggtgtacaacag

Basic information

species Zea mays
transcript GRMZM2G167886_T01
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G167886_T01 (Zea mays), 5'ss of exon 12
lower sequence: LOC_Os09g12550.1 (Oryza sativa), 5'ss of exon 13
AGACATGGAGCTTGTAAGAGTTCTTCCTAGTGTAGGAGAGGAAGTCAATGTTGCATGTTTTCATCCTTCCCCTGGATCAGGTCTTGTTTATGGGACTAAGgtgagtagcaagttaagatcagcgacaaaaatggaataaatatatgctctgctgatgcttctggtgtacaacag
|||||||||||||||||||||| | |||||||  | ||| ||||||||||| |||||||||||||||||||||||  |||||||||||||||||||||||||||||  ||||||| | |||    |||| ||||||| |||||  |     ||||||||| || || |  ||||
AGACATGGAGCTTGTAAGAGTTATCCCTAGTGCTGAAGATGAAGTCAATGTCGCATGTTTTCATCCTTCCCCTGGTGCAGGTCTTGTTTATGGGACTAAGgtgagtgacaagttagg-tcaatatcaaagatggaatgaatattggtatatctgatgcttatgttgaatcacag

upper sequence: GRMZM2G167886_T01 (Zea mays), 5'ss of exon 12
lower sequence: AT5G43930.1 (Arabidopsis thaliana), 5'ss of exon 12
AGACATGGAGCTTGTAAGAGTTCTTCCTAGTGTAGGAGAGGAAGTCAATGTTGCATGTTTTCATCCTTCCCCTGGATCAGGTCTTGTTTATGGGACTAAGgtgag---tagcaagttaag--atcagcgacaaaaatggaataaatatatgctctgctgatgcttctggtgtacaacag-----------------
||| ||||||||||| ||||| || || |||  ||  || ||||| || ||||| |||||||||||||| ||||||  |||||||||||||||||| ||||| |    ||   | | |    || | |||  || |  |      |      |||| | ||  |   |    |  ||                   
AGATATGGAGCTTGTGAGAGTACTGCCAAGTTCAGAGGATGAAGTGAACGTTGCGTGTTTTCATCCTTCTCCTGGAGGAGGTCTTGTTTATGGGACAAAGgtaaaccatattgaatcagatcattatcgattaacaatgttcggtttgggaatctgatcat--tatcgactcatgactcatgttttttttccgtag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|76909049|gb|DV163197.1|DV163197
EST:     TTGCATGTTTTCATCCTTCCCCTGGATCAGGTCTTGTTTATGGGACTAAG                         CAAGGGAAGGTTAGGTTTCTTCGGCACCATGGTGCATCATTCACTTGCTGG
genomic: TTGCATGTTTTCATCCTTCCCCTGGATCAGGTCTTGTTTATGGGACTAAGgtgagtagca ... tgtacaacagCAAGGGAAGGTTAGGTTTCTTCGGCACCATGGTGCATCATTCACTTGCTGG