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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTTGAGACATGCTACCAAATAGCTCTTGCAATAAAAAAGGAGGTTGAGGATCTTGAGGCTGCTGGTATTCAGgtttgtatattcctgttttataagtttgatttctagttcttatttcatcagtatgtccatgtgcaacaacatctctttttttctctctctttgcag

Basic information

species Zea mays
transcript GRMZM2G165747_T02
intron # 12
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32922226|gb|CF027038.1|CF027038
EST:     CTCTTGCAATAAAAAAGGAGGTTGAGGATCTTGAGGCTGCTGGTATTCAG                         GTGATCCAGATTGATGAGGC
genomic: CTCTTGCAATAAAAAAGGAGGTTGAGGATCTTGAGGCTGCTGGTATTCAGgtttgtatat ... ctctttgcagGTGATCCAGATTGATGAGGC
EST: gi|32862876|gb|CF002558.1|CF002558
EST:     CTCTTGCAATAAAAAAGGAGGTTGAGGATCTTGAGGCTGCTGGTATTCAG                         GTGATCCAGATTGATGAGGCAGCTCTAAGGGAGGGTCTGCCACTGCGCAAG
genomic: CTCTTGCAATAAAAAAGGAGGTTGAGGATCTTGAGGCTGCTGGTATTCAGgtttgtatat ... ctctttgcagGTGATCCAGATTGATGAGGCAGCTCTAAGGGAGGGTCTGCCACTGCGCAAG
EST: gi|211327188|gb|FL127497.1|FL127497
EST:     CTCTTGCAATAAAAAAGGAGGTTGAGGATCTTGAGGCTGCTGGTATTCAG                         GTGATCCAGATTGATGAGGCAGCTCTAAGGGAGGGTCTGCCACTGCGCAAG
genomic: CTCTTGCAATAAAAAAGGAGGTTGAGGATCTTGAGGCTGCTGGTATTCAGgtttgtatat ... ctctttgcagGTGATCCAGATTGATGAGGCAGCTCTAAGGGAGGGTCTGCCACTGCGCAAG
EST: gi|31361660|gb|CD446017.1|CD446017
EST:     CTCTTGCAATAAAAAAGGAGGTTGAGGATCTTGAGGCTGCTGGTATCCAG                         GTGATCCAGATTGATGAGGCAGCTCTAAGGGAGGGTCTGCCACTGC
genomic: CTCTTGCAATAAAAAAGGAGGTTGAGGATCTTGAGGCTGCTGGTATTCAGgtttgtatat ... ctctttgcagGTGATCCAGATTGATGAGGCAGCTCTAAGGGAGGGTCTGCCACTGC
EST: gi|30087177|gb|CB885385.1|CB885385
EST:     CTCTTGCAATAAAAAAGGAGGTTGAGGATCTTGAGGCTGCTGGTATTCAG                         GTGATCCAGATTGATGAGGCAGCTCTAAGG
genomic: CTCTTGCAATAAAAAAGGAGGTTGAGGATCTTGAGGCTGCTGGTATTCAGgtttgtatat ... ctctttgcagGTGATCCAGATTGATGAGGCAGCTCTAAGG
EST: gi|31362393|gb|CD446750.1|CD446750
EST:     CTCTTGCAATAAAAAAGGAGGTTGAGGATCTTGAGGCTGCTGGTATTCAG                         GTGATCCAGATTGATGAGGCAGCTCTAAGGGAGGGTCTGCCACTGCGCAAG
genomic: CTCTTGCAATAAAAAAGGAGGTTGAGGATCTTGAGGCTGCTGGTATTCAGgtttgtatat ... ctctttgcagGTGATCCAGATTGATGAGGCAGCTCTAAGGGAGGGTCTGCCACTGCGCAAG
EST: gi|33091691|gb|CF051685.1|CF051685
EST:     CTCTTGCAATAAAAAAGGAGGTTGAGGATCTTGAGGCTGCTGGTATTCAG                         GTGATCCAGATTGATGAGGCAGCTCTAAGGGAGGGTCTGCCACTGCGCAAG
genomic: CTCTTGCAATAAAAAAGGAGGTTGAGGATCTTGAGGCTGCTGGTATTCAGgtttgtatat ... ctctttgcagGTGATCCAGATTGATGAGGCAGCTCTAAGGGAGGGTCTGCCACTGCGCAAG
EST: gi|67026378|gb|CO455127.1|CO455127
EST:     CTCTTGCAATAAAAAAGGAGGTTGAGGATCTTGAGGCTGCTGGTATTCAG                         GTGATCCAGATTGATGAGGCAGCTCTAAGGGAGGGTCTGCCACTGCGCAAG
genomic: CTCTTGCAATAAAAAAGGAGGTTGAGGATCTTGAGGCTGCTGGTATTCAGgtttgtatat ... ctctttgcagGTGATCCAGATTGATGAGGCAGCTCTAAGGGAGGGTCTGCCACTGCGCAAG
EST: gi|33100623|gb|CF060583.1|CF060583
EST:     CTCTTGCAATAAAAAAGGAGGTTGAGGATCTTGAGGCTGCTGGTATTCAG                         GTGATCCAGATTGATGAGGCAGCTCTAAGGGAGGGTCTGCCACTGCGCAAG
genomic: CTCTTGCAATAAAAAAGGAGGTTGAGGATCTTGAGGCTGCTGGTATTCAGgtttgtatat ... ctctttgcagGTGATCCAGATTGATGAGGCAGCTCTAAGGGAGGGTCTGCCACTGCGCAAG
EST: gi|32849879|gb|CD989560.1|CD989560
EST:     CTCTTGCAATAAAAAAGGAGGTTGAGGATCTTGAGGCTGCTGGTATTCAG                         GTGATCCAGATTGATGAGGCAGCTCTAAGGGAGGGTCTGCCACTGCGCAAG
genomic: CTCTTGCAATAAAAAAGGAGGTTGAGGATCTTGAGGCTGCTGGTATTCAGgtttgtatat ... ctctttgcagGTGATCCAGATTGATGAGGCAGCTCTAAGGGAGGGTCTGCCACTGCGCAAG
EST: gi|31362419|gb|CD446776.1|CD446776
EST:     TGAGGCTGCTGGTATTCAG                         GTGATCCAGATTGATGAGGCAGCTCTAAGGGAGGGTCTGCCACTGCGCAAG
genomic: TGAGGCTGCTGGTATTCAGgtttgtatat ... ctctttgcagGTGATCCAGATTGATGAGGCAGCTCTAAGGGAGGGTCTGCCACTGCGCAAG
EST: gi|32944358|gb|CF049177.1|CF049177
EST:     CTCTTGCAATAAAAAAGGAGGTTGAGGATCTTGAGGCTGCTGGTATTCAG                         GTGATCCAGATTGATGAGGCAGCTCTAAGGGAGGGTCTGCCACTGCGCAAG
genomic: CTCTTGCAATAAAAAAGGAGGTTGAGGATCTTGAGGCTGCTGGTATTCAGgtttgtatat ... ctctttgcagGTGATCCAGATTGATGAGGCAGCTCTAAGGGAGGGTCTGCCACTGCGCAAG
EST: gi|32847292|gb|CD986973.1|CD986973
EST:     CTCTTGCAATAAAAAAGGAGGTTGAGGATCTTGAGGCTGCTGGTATTCAG                         GTGATCCAGATTGATGAGGCAGCTCTAAGGGAGGGTCTGCCACTGCGCAAG
genomic: CTCTTGCAATAAAAAAGGAGGTTGAGGATCTTGAGGCTGCTGGTATTCAGgtttgtatat ... ctctttgcagGTGATCCAGATTGATGAGGCAGCTCTAAGGGAGGGTCTGCCACTGCGCAAG
EST: gi|211331517|gb|FL127526.1|FL127526
EST:     GCTGGTATTCAG                         GTGATCCAGATTGATGAGGCAGCTCTAAGGGAGGGTCTGCCACTGCGCAAG
genomic: GCTGGTATTCAGgtttgtatat ... ctctttgcagGTGATCCAGATTGATGAGGCAGCTCTAAGGGAGGGTCTGCCACTGCGCAAG
EST: gi|211329357|gb|FL127510.1|FL127510
EST:     GCTGGTATTCAG                         GTGATCCAGATTGATGAGGCAGCTCTAAGGGAGGGTCTGCCACTGCGCAAG
genomic: GCTGGTATTCAGgtttgtatat ... ctctttgcagGTGATCCAGATTGATGAGGCAGCTCTAAGGGAGGGTCTGCCACTGCGCAAG
EST: gi|211468384|gb|FL469331.1|FL469331
EST:     TC-TGCAAATAAAAAAGGAGGTTGAGGATCTTGAGGCTGCTGGTATTCAG                         GTGATCCAGATTGATGAGGCAGCTCTAAGGGAGGGTCTGCCACTGCGCAAG
genomic: TCTTGC-AATAAAAAAGGAGGTTGAGGATCTTGAGGCTGCTGGTATTCAGgtttgtatat ... ctctttgcagGTGATCCAGATTGATGAGGCAGCTCTAAGGGAGGGTCTGCCACTGCGCAAG
EST: gi|211333680|gb|FL127538.1|FL127538
EST:     CTCTTGCAATAAAAAAGGAGGTTGAGGATCTTGAGGCTGCTGGTATTCAG                         GTGATCCAGATTGATGAGGCAGCTCTAAGGGAGGGTCTGCCACTGCGCAAG
genomic: CTCTTGCAATAAAAAAGGAGGTTGAGGATCTTGAGGCTGCTGGTATTCAGgtttgtatat ... ctctttgcagGTGATCCAGATTGATGAGGCAGCTCTAAGGGAGGGTCTGCCACTGCGCAAG
EST: gi|211329356|gb|FL127509.1|FL127509
EST:     CTCTTGCAATAAAAAAGGAGGTTGAGGATCTTGAGGCTGCTGGTATTCAG                         GTGATCCAGATTGATGAGGCAGCTCTAAGGGAGGGTCTGCCACTGCGCAAG
genomic: CTCTTGCAATAAAAAAGGAGGTTGAGGATCTTGAGGCTGCTGGTATTCAGgtttgtatat ... ctctttgcagGTGATCCAGATTGATGAGGCAGCTCTAAGGGAGGGTCTGCCACTGCGCAAG
EST: gi|32944605|gb|CF049424.1|CF049424
EST:     CTCTTGCAATAAAAAAGGAGGTTGAGGATCTTGAGGCTGCTGGTATTCAG                         GTGATCCAGATTGATGAGGCAGCTCTAAGGGAGGGTCTGCCACTGCGCAAG
genomic: CTCTTGCAATAAAAAAGGAGGTTGAGGATCTTGAGGCTGCTGGTATTCAGgtttgtatat ... ctctttgcagGTGATCCAGATTGATGAGGCAGCTCTAAGGGAGGGTCTGCCACTGCGCAAG
EST: gi|32923062|gb|CF027874.1|CF027874
EST:     CTCTTGCAATAAAAAAGGAGGTTGAGGATCTTGAGGCTGCTGGTATTCAG                         GTGATCCAGATTGATGAGGCAGCTCTAAGGGAGGGTCTGCCACTGCGCAAG
genomic: CTCTTGCAATAAAAAAGGAGGTTGAGGATCTTGAGGCTGCTGGTATTCAGgtttgtatat ... ctctttgcagGTGATCCAGATTGATGAGGCAGCTCTAAGGGAGGGTCTGCCACTGCGCAAG
EST: gi|32929227|gb|CF034039.1|CF034039
EST:     CTCTTGCAATAAAAAAGGAGGTTGAGGATCTTGAGGCTGCTGGTATTCAG                         GTGATCCAGATTGATGAGGCAGCTCTAAGGGAGGGTCTGCCACTGCGCAAG
genomic: CTCTTGCAATAAAAAAGGAGGTTGAGGATCTTGAGGCTGCTGGTATTCAGgtttgtatat ... ctctttgcagGTGATCCAGATTGATGAGGCAGCTCTAAGGGAGGGTCTGCCACTGCGCAAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTTTGAGACATGCTACCAAATAGCTCTTGCAATAAAAAAGGAGGTTGAGGATCTTGAGGCTGCTGGTATTCAGgtttgtatattcctgttttataagtttgatttctagttcttatttcatcagtatgtccatgtgcaacaacatctctttttttctctctctttgcag

- - - - - - - - - - - - - - - - - -  AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT