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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATCGATCTCCTCGCCAGGATGGTCGATCCGGCGCTGGACGGGCTGTACCCTTCCAAGTCCCTCTCCCGTTTCGCCGACATCATCGCCATCTGCGTCCAGgtacgtacgcgcgttctttgccgctatagctgcacaaagtccatctcgatctcttctgtgggaaaaaaggcttgtttttttgttttttttttttttttttgcag

Basic information

species Zea mays
transcript GRMZM2G162531_T03
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G162531_T03 (Zea mays), 5'ss of exon 12
lower sequence: PP1S64_28V6.2 (Physcomitrella patens), 5'ss of exon 16
CATCGATCTCCTCGCCAGGATGGTCGATCCGGCGCTGGACGGGCTGTACCCTTCCAAGTCCCTCTCCCGTTTCGCCGACATCATCGCCATCTGCGTCCAGgtacgtacgcgcgttctttgccgctat-agctgcacaaagtccatctcgatctcttct---gtgggaaaaaaggcttgtttttttgttttttttttttttttttgcag-----------------------------------------------------------------
 || |||   ||||| || ||||| ||||| ||| | || ||    |||||| |||||||||||||||| || ||||||||| | ||| | || |||||||||   ||| |  ||||     |   | | ||||    |    |||   ||  |   |    | | |    |        |||   |    ||  |  |  |   ||                                                                  
TATTGATGCACTCGCAAGAATGGTGGATCCAGCGTTAGAGGGTGCTTACCCTGCCAAGTCCCTCTCCCGGTTTGCCGACATCGTTGCCTTGTGTGTCCAGgta---acgagttttctcacatgtagtcacctgcttgtatgatatcataatacccagtcagatagtaggggacaaccacctttggatcaaattcatactgctaatcatgataaattcattagttatatattattttaattctaatacaccttccatgtggtatttgtggacag