Sequence
atgc intronic sequence ATGC exonic sequenceCCCAGTCTGAAAACAAGAAGCAGTTTGAGCTGGACCTTGACCGCATAGCTAAGGGTGAAGACTCGCGCACCACACTGATGATAAAAAACATTCCTAACAAgtacgtctacgccttatgccaacttttgattccatacacccaggctattgtttcaggctggcgtttttttttctttgtagacttatagttgatgccatcaacag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G156956_T02 (Zea mays), 5'ss of exon 12
lower sequence: LOC_Os05g01240.2 (Oryza sativa), 5'ss of exon 11
CCCAGTCTGAAAACAAGAAGCAGTTTGAGCTGGACCTTGACCGCATAGCTAAGGGTGAAGACTCGCGCACCACACTGATGATAAAAAACATTCCTAACAAgtacgt-ctacgccttatgccaacttttgattccatacacccaggctattgtttcaggctggcgtttttttttctttg--tagacttatagttgatgccatcaacag
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CACAGTCTGAAAACAAACGGCAATTTGAGCTTGACATTGATCGCATAGCAAAGGGTGAAGATTCACGCACCACCCTGATGATCAAGAACATACCAAACAAgtaggttctgcacatcttgccaccggttg---ccagctgtcttgcacattactcaggtatcttttttttcttctgttgactcaagtcatacttgatgtgatccacag
upper sequence: GRMZM2G156956_T02 (Zea mays), 5'ss of exon 12
lower sequence: AT5G61960.2 (Arabidopsis thaliana), 5'ss of exon 10
CCCAGTC-TGAAAACAAGAAGCAGTTTGAGCTGGACCTTGACCGCATAGCTAAGGGTGAAGACTCGCGCACCACACTGATGATAAAAAACATTCCTAACAAgtacgtctacgccttatgccaacttttgattccatacacccaggctattgtttcaggctggcgtttttttttctttgtagacttatagt-tgatgccatcaacag-------------------------------------------
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-CTAGCAATGCTGACAAAAAACTGTATGAGCTTGACGTTGACCGTATATTACGTGGGGAGGACAGGAGGACAACATTGATGATTAAAAACATTCCTAACAAgtacgtgaactcagtgtctct-cttttatttttcttgtctatatcttctgcaactatttatagtttgtgtctttagttaaagatgtattctgttttcatctttgactctcttttttttttttttttttttaattctgctatggtttagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|60394908|gb|DN227777.1|DN227777EST: AAGGGTGAAGACTCGCGCACCACACTGATGATAAAAAACATTCCTAACAA GTACACCAGTAAGCTGCTTTTGGCTGTCATTGATGAGAATCACCGAGGAAC
genomic: AAGGGTGAAGACTCGCGCACCACACTGATGATAAAAAACATTCCTAACAAgtacgtctac ... ccatcaacagGTACACCAGTAAGCTGCTTTTGGCTGTCATTGATGAGAATCACCGAGGAAC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CCCAGTCTGAAAACAAGAAGCAGTTTGAGCTGGACCTTGACCGCATAGCTAAGGGTGAAGACTCGCGCACCACACTGATGATAAAAAACATTCCTAACAAgtacgtctacgccttatgccaacttttgattccatacacccaggctattgtttcaggctggcgtttttttttctttgtagacttatagttgatgccatcaacag
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