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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCGTTCCCGGAGAACAAGCTCTGGAAACTCAATCAGTTTGAAAGTCTCTGGCTCTACATCTGTCTATCAGTTGAAACTGATGATATGGGAATCTTTAGGGgtatgcacaaggggaatcactaaaattgtgcgatcacagatactaatctgtaccatagttgtttccttcttcatgtttcaaaagggacttcatacattta...

Basic information

species Zea mays
transcript GRMZM2G154621_T01
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G154621_T01 (Zea mays), 5'ss of exon 12
lower sequence: LOC_Os03g09270.1 (Oryza sativa), 5'ss of exon 3
GCGTTCCCGGAGAACAAGCTCTGGAAACTCAATCAGTTTGAAAGTCTCTGGCTCTACATCTGTCTATCAGTTGAAACTGATGATATGGGAATCTTTAGGGgtatgcacaaggggaatcactaaaattgtgcgatcacagatactaatctgtaccatagttgtttccttcttcatgtttcaaaagggacttcatacattta-----
||||||||||||||||| ||| ||||| || |||||||||||||||||||| |||||| | || |||||||||||||| |||||||||||||||||||||||||| | | ||      || | || | |    |  ||   |||    | |    || ||||| |  |  |||  |   |||  |  | | | | |  ||     
GCGTTCCCGGAGAACAACCTCAGGAAATTCGATCAGTTTGAAAGTCTCTGGTTCTACAACCGTATATCAGTTGAAACTCATGATATGGGAATCTTTAGGGgtatg-agacggactgaaaccataaatttttttttgcaagaactg--ttattgtttacttgttgcgat--tcagataataaagagaccataaaagaaataagcct

upper sequence: GRMZM2G154621_T01 (Zea mays), 5'ss of exon 12
lower sequence: Vv04s0008g03170.t01 (Vitis vinifera), 5'ss of exon 11
GCGTTCCCGGAGAACAAGCTCTGGAAACTCAATCAGTTTGAAAGTCTCTGGCTCTACATCTGTCTATCAGTTGAAACTGATGATATGGGAATCTTTAGGGgtatgc-aca--------aggggaatcac-taaaattgtgcgatcacagatact------------aatctgtacc--atagttgtttccttcttcatgtttcaaaagggacttcatacattta---
||| || || |  ||||  | |||||| || || | | ||||||| ||||| || |||||  |||| ||||| ||| |||||||||||||||| || |||||| || |||        |    || ||| | |  |||    |||| ||  ||             ||||| |     ||| ||  | | |  ||    ||||   |  || ||  || || |    
GCGCTCTCGAAAGACAAATTTTGGAAATTCGATAAATCTGAAAGTTTCTGGGTCCACATCAATCTACCAGTTAAAAATGATGATATGGGAATCCTTTGGGgtaggctacatcttttaaaaaccaaacacatgattttggtttatcaaagtcacatttttttttttaaatctatgtttgataatttgtgcttatttttgttttctctaatgagttagtatatatgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78180216|gb|DV550589.1|DV550589
EST:     GCTCTACATCTGTCTATCAGTTGAAACTGATGATATGGGAATCTTTAGGG                         ATTGTTAAGGAGAACCAAATGCTTCACAAAGGCTCTGTTGAGATTGAAGAT
genomic: GCTCTACATCTGTCTATCAGTTGAAACTGATGATATGGGAATCTTTAGGGgtatgcacaa ... ttacattcagATTGTTAAGGAGAACCAAATGCTTCACAAAGGCTCTGTTGAGATTGAAGAT
EST: gi|20802745|gb|BQ293795.1|BQ293795
EST:     GCTCTACATCTGTCTATCAGTTGAAACTGATGATATGGGAATCTTTAGGG                         ATTGTTAAGGAGAACCAAATGCTTCACAAAGGCTCTGTTGAGATTGAAGAT
genomic: GCTCTACATCTGTCTATCAGTTGAAACTGATGATATGGGAATCTTTAGGGgtatgcacaa ... ttacattcagATTGTTAAGGAGAACCAAATGCTTCACAAAGGCTCTGTTGAGATTGAAGAT