Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGGAGGACAATGTTTGGAATTGCTGTAGTTCCATCCATTCTGCTGGCTGTAGGAATGGCCTTTTCGCCTGAAAGCCCTCGTTGGCTATTCCAGgtttatttttgaaaattatttcaccatatttgtactctggcctccagactgtggcacaatactcaagatttacttttctgatattaactgcag

Basic information

species Zea mays
transcript GRMZM2G153704_T01
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G153704_T01 (Zea mays), 5'ss of exon 12
lower sequence: LOC_Os01g04190.2 (Oryza sativa), 5'ss of exon 8
GTGGAGGACAATGTTTGGAATTGCTGTAGTTCCATCCATTCTGCTGGCTGTAGGAATGGCCTTTTCGCCTGAAAGCCCTCGTTGGCTATTCCAGgtttatttttgaaaattatttcaccatatttgtactctggcctccagactgtggcacaatactcaagatttacttttctgatattaactgcag
||||||||||||||| |||||| |  | |||||||||||| |||| ||| | || |||||  |||| ||||||||||||||||||||||||||||||| |   ||  || |   |     ||| | |  |    |||| | |||   || | | ||| |    | | | |||||  |||||||||||
GTGGAGGACAATGTTCGGAATTTCAATTGTTCCATCCATTTTGCTTGCTCTTGGGATGGCTGTTTCACCTGAAAGCCCTCGTTGGCTATTCCAGgtttgtacatggcaaatccct-----tatctatgtttctacctc-aaacttaagcccgacactta---ctgattcttctgtgattaactgcag

upper sequence: GRMZM2G153704_T01 (Zea mays), 5'ss of exon 12
lower sequence: Vv14s0006g02720.t01 (Vitis vinifera), 5'ss of exon 8
GTGGAGGACAATGTTTGGAATTGCTGTAGTTCCATCCATTCTGCTGGCTGTAGGAATGGCCTTTTCGCCTGAAAGCCCTCGTTGGCTATTCCAGgtttatttttgaaaattatttcaccatatttgtactctg-gcctccagactgtggcacaatactcaagatttacttt-tctgatattaactgcag-----------------------------------------------------
||||||||||||||||||  ||||||| || || || |||||  ||||| | |||||||| ||||| || || || ||||| ||||| || ||||||| ||||   |  |||||    || || ||   |    |  || | |  |       ||  |  |  | | |  | | |   ||  | |  |                                                      
GTGGAGGACAATGTTTGGTGTTGCTGTTGTCCCCTCTATTCTATTGGCTTTGGGAATGGCATTTTCTCCAGAGAGTCCTCGGTGGCTTTTTCAGgtttcttttgctaggttattcagtcacatatggtttgaatgtttctacatgggatttttatttttcatttctgcagtatattcaatccattttatctaggtcattagtttatcaatatagattctgagctaaacacatttctttgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|60400456|gb|DN233263.1|DN233263
EST:     TGGCTGTAGGAATGGCCTTTTCGCCTGAAAGCCCTCGTTGGCTATTCCAG                         CAAGGAAAGGTTACTCAAGCAGAATTAGCTGTAAAAAGACTGTATGGAAAA
genomic: TGGCTGTAGGAATGGCCTTTTCGCCTGAAAGCCCTCGTTGGCTATTCCAGgtttattttt ... ttaactgcagCAAGGAAAGGTTACTCAAGCAGAATTAGCTGTAAAAAGACTGTATGGAAAA
EST: gi|32832104|gb|CD971782.1|CD971782
EST:     TGGCTGTAGGAATGGCCTTTTCGCCTGAAAGCCCTCGTTGGCTATTCCAG                         CAAGGAAAGGTTACTCAAGCAGAATTAGCTGTAAAAAGACTGTATGGAAAA
genomic: TGGCTGTAGGAATGGCCTTTTCGCCTGAAAGCCCTCGTTGGCTATTCCAGgtttattttt ... ttaactgcagCAAGGAAAGGTTACTCAAGCAGAATTAGCTGTAAAAAGACTGTATGGAAAA
EST: gi|61119088|gb|DN560049.1|DN560049
EST:     TGGCTGTAGGAATGGCCTTTTCGCCTGAAAGCCCTCGTTGGCTATTCCAG                         CAAGGAAAGGTTACTCAAGCAGAATTAGCTGTAAAAAGACTGTATGGAAAA
genomic: TGGCTGTAGGAATGGCCTTTTCGCCTGAAAGCCCTCGTTGGCTATTCCAGgtttattttt ... ttaactgcagCAAGGAAAGGTTACTCAAGCAGAATTAGCTGTAAAAAGACTGTATGGAAAA
EST: gi|67035008|gb|CO463541.1|CO463541
EST:     TGGCTGTAGGAATGGCCTTTTCGCCTGAAAGCCCTCGTTGGCTATTCCAG                         CAAGGAAAGGTTACTCAAGCAGAATTAGCTGTAAAAAGACTGTATGGAAAA
genomic: TGGCTGTAGGAATGGCCTTTTCGCCTGAAAGCCCTCGTTGGCTATTCCAGgtttattttt ... ttaactgcagCAAGGAAAGGTTACTCAAGCAGAATTAGCTGTAAAAAGACTGTATGGAAAA
EST: gi|60339583|gb|DN206556.1|DN206556
EST:     TGGCTGTAGGAATGGCCTTTTCGCCTGAAAGCCCTCGTTGGCTATTCCAG                         CAAGGAAAGGTTACTCAAGCAGAATTAGCTGTAAAAAGACTGTATGGAAAA
genomic: TGGCTGTAGGAATGGCCTTTTCGCCTGAAAGCCCTCGTTGGCTATTCCAGgtttattttt ... ttaactgcagCAAGGAAAGGTTACTCAAGCAGAATTAGCTGTAAAAAGACTGTATGGAAAA
EST: gi|67037358|gb|CO464198.1|CO464198
EST:     TGGCTGTAGGAATGGCCTTTTCGCCTGAAAGCCCTCGTTGGCTATTCCAG                         CAAGGAAAGGTTACTCAAGCAGAATTAGCTGTAAAAAGACTGTATGGAAAA
genomic: TGGCTGTAGGAATGGCCTTTTCGCCTGAAAGCCCTCGTTGGCTATTCCAGgtttattttt ... ttaactgcagCAAGGAAAGGTTACTCAAGCAGAATTAGCTGTAAAAAGACTGTATGGAAAA
EST: gi|32933856|gb|CF038668.1|CF038668
EST:     TGGCTGTAGGAATGGCCTCTTCGCCTGAAAGCCCTCGTTGGCTATTCCAG                         CAAGGAAAGGTTACTCAAGCAGAATTAGCTGTAAAAAGACTGTATGGAAAA
genomic: TGGCTGTAGGAATGGCCTTTTCGCCTGAAAGCCCTCGTTGGCTATTCCAGgtttattttt ... ttaactgcagCAAGGAAAGGTTACTCAAGCAGAATTAGCTGTAAAAAGACTGTATGGAAAA
EST: gi|7844519|gb|AW787741.1|AW787741
EST:     TGGCTGTAGGAATGGCCTTTTCGCCTGAAAGCCCTCGTTGGCTATTCCAG                         CANGGAAAGGTTACTCAAGCAGAATTAGCTGTAAAAAGACTGTATGGAAAA
genomic: TGGCTGTAGGAATGGCCTTTTCGCCTGAAAGCCCTCGTTGGCTATTCCAGgtttattttt ... ttaactgcagCAAGGAAAGGTTACTCAAGCAGAATTAGCTGTAAAAAGACTGTATGGAAAA
EST: gi|211050167|gb|FL124868.1|FL124868
EST:     TGGCTGTAGGAATGGCCTTTTCGCCTGAAAGCCCTCGTTGGCTATTCCAG                         CAAGGAAAGGTTACTCAAGCAGAATTAGCTGTAAAAAGACTGTATGGAAAA
genomic: TGGCTGTAGGAATGGCCTTTTCGCCTGAAAGCCCTCGTTGGCTATTCCAGgtttattttt ... ttaactgcagCAAGGAAAGGTTACTCAAGCAGAATTAGCTGTAAAAAGACTGTATGGAAAA
EST: gi|78179345|gb|DV549718.1|DV549718
EST:     TGGCTGTAGGAATGGCCTTTTCGCCTGAAAGCCCTCGTTGGCTATTCCAG                         CAAGGAAAGGTTACTCAAGCAGAATTAGCTGTAAAAAGACTGTATGGAAAA
genomic: TGGCTGTAGGAATGGCCTTTTCGCCTGAAAGCCCTCGTTGGCTATTCCAGgtttattttt ... ttaactgcagCAAGGAAAGGTTACTCAAGCAGAATTAGCTGTAAAAAGACTGTATGGAAAA
EST: gi|7844129|gb|AW787332.1|AW787332
EST:     TGGCTGTAGGAATGGCCTTTTCGCCTGAAAGCCCTCGTTGGCTATTCCAG                         C-AGG-AAGGTTACTCAAGCAGAATTAGCTGTAAAAAGACTGTATGGAAAA
genomic: TGGCTGTAGGAATGGCCTTTTCGCCTGAAAGCCCTCGTTGGCTATTCCAGgtttattttt ... ttaactgcagCAAGGAAAGGTTACTCAAGCAGAATTAGCTGTAAAAAGACTGTATGGAAAA
EST: gi|32847646|gb|CD987327.1|CD987327
EST:     TGGCTGTAGGAATGGCCTTTTCGCCTGAAAGCCCTCGTTGGCTATTCCAG                         CAAGGAAAGGTTACTCAAGCAGAATTAGCTGTAAAAAGACTGTATGGAAAA
genomic: TGGCTGTAGGAATGGCCTTTTCGCCTGAAAGCCCTCGTTGGCTATTCCAGgtttattttt ... ttaactgcagCAAGGAAAGGTTACTCAAGCAGAATTAGCTGTAAAAAGACTGTATGGAAAA
EST: gi|32835079|gb|CD974757.1|CD974757
EST:     TGGCTGTAGGAATGGCCTTTTCGCCTGAAAGCCCTCGTTGGCTATTCCAG                         CAAGGAAAGGTTACTCAAGCAGAATTAGCTGTAAAAAGACTGTATGGAAAA
genomic: TGGCTGTAGGAATGGCCTTTTCGCCTGAAAGCCCTCGTTGGCTATTCCAGgtttattttt ... ttaactgcagCAAGGAAAGGTTACTCAAGCAGAATTAGCTGTAAAAAGACTGTATGGAAAA
EST: gi|22545719|gb|BU098078.1|BU098078
EST:     TGGCTGTAGGAATGGCCTTTTCGCCTGAAAGCCCTCGTTGGCTATTCCAG                         CAAGGAAAGGTTACTCAAGCAGAATTAGCTGTAAAAAGACTGTATGGAAAA
genomic: TGGCTGTAGGAATGGCCTTTTCGCCTGAAAGCCCTCGTTGGCTATTCCAGgtttattttt ... ttaactgcagCAAGGAAAGGTTACTCAAGCAGAATTAGCTGTAAAAAGACTGTATGGAAAA