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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTCCAGGAAGCAAGAAGGGTCAAACACTTCTAGCAGCTCTCCTGATACTGACAATGAAGTTCATCCTTCAAATTCAGAAGGATTTCGAGGTTTTCTTCAGgtctgctgacatcttttgtgttctcctagaaccaaaataagtttatacgtttgagttgttgaccttgtttatttatgtattatttaatgtattag

Basic information

species Zea mays
transcript GRMZM2G152319_T02
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G152319_T02 (Zea mays), 5'ss of exon 12
lower sequence: LOC_Os03g13790.1 (Oryza sativa), 5'ss of exon 11
CTCCAGGAAGCAAGAAGGGTCAAACACTTC---TAGCAGCTCTCCTGATACTGACAATGAAGTTCATCCTTCAAATTCAGAAGGATTTCGAGGTTTTCTTCAGgtctgctgacatcttttgtgttctcctagaaccaaaataagtttatacgtttgagttgttgaccttgtttatttatgtattatttaatgtattag
    ||||||| |||||| ||||| | |||   |||||||||||| |||| ||||| ||| |||||||||||||| |||||||| |||| | ||||||||||||| || |  ||| | |||      |||||||    |||||    | |  |||   |   |    ||||| |||||||  ||||||  |||   ||
---TAGGAAGCGAGAAGGTTCAAATAATTCAGCTAGCAGCTCTCCCGATAGTGACAGTGATGTTCATCCTTCAAACTCAGAAGGGTTTCAATGTTTTCTTCAGgtttgttc-catttattgatccaacctagaat---aataa----acatttttttatacatagtattgttaatttatgacttatttggtgttgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6952326|gb|AW424394.1|AW424394
EST:     ACAATGAAGTTCATCCTTCAAATTCAGAAGGATTTCGAGGTTTTCTTCAG                         GACTTGACTGGACGAGAGACTGATGCTGATAATCCTTGTAATGATGACGCC
genomic: ACAATGAAGTTCATCCTTCAAATTCAGAAGGATTTCGAGGTTTTCTTCAGgtctgctgac ... aatgtattagGACTTGACTGGACGAGAGACTGATGCTGATAATCCTTGTAATGATGACGCC
EST: gi|84908455|gb|DW404333.1|DW404333
EST:     CAATGAAGTTCATCCTTCAAATTTCAGAAGGATTTCGAGGTTTTCTTCAG                         GACTTGACTGGACGAGAGACTGATGCTGATA
genomic: CAATGAAGTTCATCCTTCAAATT-CAGAAGGATTTCGAGGTTTTCTTCAGgtctgctgac ... aatgtattagGACTTGACTGGACGAGAGACTGATGCTGATA
EST: gi|6195038|gb|AW147142.1|AW147142
EST:     ACAATGAAGTTCATCCTTCAAATTCAGAAGGATTTCGAGGTTTTCTTCAG                         GACTTGACTGGACGAGAGACTGATGCTGATAATCCTTGTAATGATGACGCC
genomic: ACAATGAAGTTCATCCTTCAAATTCAGAAGGATTTCGAGGTTTTCTTCAGgtctgctgac ... aatgtattagGACTTGACTGGACGAGAGACTGATGCTGATAATCCTTGTAATGATGACGCC
EST: gi|6827796|gb|AW331439.1|AW331439
EST:     GGATTTCGAGGTTTTCTTCAG                         GACTTGACTGGACGAGAGACTGATGCTGATAATCCTTGTAATGATGACGCC
genomic: GGATTTCGAGGTTTTCTTCAGgtctgctgac ... aatgtattagGACTTGACTGGACGAGAGACTGATGCTGATAATCCTTGTAATGATGACGCC
EST: gi|6166619|gb|AW144883.1|AW144883
EST:     ACAATGAAGNTCATCCTTCAAATTCAGAAGGATTTCGAGGTTTTCTTCAG                         GACTTGACTGGACGAGAGACTGATGCTGATAATCCTTGTAATGATGACGCC
genomic: ACAATGAAGTTCATCCTTCAAATTCAGAAGGATTTCGAGGTTTTCTTCAGgtctgctgac ... aatgtattagGACTTGACTGGACGAGAGACTGATGCTGATAATCCTTGTAATGATGACGCC
EST: gi|21987664|gb|BQ779192.1|BQ779192
EST:     ACAATGAAGTTCATCCTTCAAATTCAGAAGGATTTCGAGGTTTTCTTCAG                         GACTTGACTGGACGAGAGACTGATGCTGATAATCCTTGTAATGATGACGCC
genomic: ACAATGAAGTTCATCCTTCAAATTCAGAAGGATTTCGAGGTTTTCTTCAGgtctgctgac ... aatgtattagGACTTGACTGGACGAGAGACTGATGCTGATAATCCTTGTAATGATGACGCC
EST: gi|6057103|gb|AW091508.1|AW091508
EST:     AGTTCATCCTTCAAATTCAGAAGGATTTCGAGGTTTTCTTCAG                         GACTTGACTGGACGAGAGACTGATGCTGATAATCCTTGTAATGATGACGCC
genomic: AGTTCATCCTTCAAATTCAGAAGGATTTCGAGGTTTTCTTCAGgtctgctgac ... aatgtattagGACTTGACTGGACGAGAGACTGATGCTGATAATCCTTGTAATGATGACGCC
EST: gi|32945441|gb|CF050260.1|CF050260
EST:     ACAATGAAGTTCATCCTTCAAATTCAGAAGGATTTCGAGGTTTTCTTCAG                         GACTTGACTGGACGAGAGACTGATGCTGATAATCCTTGTAATGATGACGCC
genomic: ACAATGAAGTTCATCCTTCAAATTCAGAAGGATTTCGAGGTTTTCTTCAGgtctgctgac ... aatgtattagGACTTGACTGGACGAGAGACTGATGCTGATAATCCTTGTAATGATGACGCC
EST: gi|71431160|gb|DR812210.1|DR812210
EST:     ACAATGAAGTTCATCCTTCAAATTCAGAAGGATTTCGAGGTTTTCTTCAG                         GACTTGACTGGACGAGAGACTGATGCTGATAATCCTTGTAATGATGACGCC
genomic: ACAATGAAGTTCATCCTTCAAATTCAGAAGGATTTCGAGGTTTTCTTCAGgtctgctgac ... aatgtattagGACTTGACTGGACGAGAGACTGATGCTGATAATCCTTGTAATGATGACGCC
EST: gi|6166618|gb|AW144882.1|AW144882
EST:     ACAATGAAGTTCATCCTTCAAATTCAGAAGGATTTCGAGGTTTTCTTCAG                         GACTTGACTGGACGAGAGACTGATGCTGATAATCCTTGTAATGATGACGCC
genomic: ACAATGAAGTTCATCCTTCAAATTCAGAAGGATTTCGAGGTTTTCTTCAGgtctgctgac ... aatgtattagGACTTGACTGGACGAGAGACTGATGCTGATAATCCTTGTAATGATGACGCC
EST: gi|93281627|gb|EB673891.1|EB673891
EST:     ACAATGAAGTTCATCCTTCAAATTCAGAAGGATTTCGAGGTTTTCTTCAG                         GACTTGACTGGACGAGAGACTGATGCTGATAATCCTTGTAATGATGACGCC
genomic: ACAATGAAGTTCATCCTTCAAATTCAGAAGGATTTCGAGGTTTTCTTCAGgtctgctgac ... aatgtattagGACTTGACTGGACGAGAGACTGATGCTGATAATCCTTGTAATGATGACGCC