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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACCCTGACATGCTGGAGGTCGGGAACGGAGGCATGGCGTACAACGAGTACGTCGTGCACTTCAGCCTCTGGGCCATCGCCAAGgtgcgcgcgcgtgaatcatttcctttccgggctatgctcacagctaccgatgagagttattattggcgccaatcttttttgacag

Basic information

species Zea mays
transcript GRMZM2G146463_T02
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G146463_T02 (Zea mays), 5'ss of exon 12
lower sequence: LOC_Os07g26900.1 (Oryza sativa), 5'ss of exon 10
ACCCTGACATGCTGGAGGTCGGGAACGGAGGCATGGCGTACAACGAGTACGTCGTGCACTTCAGCCTCTGGGCCATCGCCAAGgtgcgcgcgcgtgaatcatttcc-----------tttccgggctatgctc----acagctaccgatgagagttattattggcgccaatcttttttgacag--------
| |||||||||||||||||||| || ||||| ||| || || ||||||||||||||||| ||||||| ||||| || ||||||||  |   ||    | ||| ||            | || |  || || ||     |   | | | ||||| |  | | ||   |  || ||| |  |           
ATCCTGACATGCTGGAGGTCGGCAATGGAGGGATGACGAACGACGAGTACGTCGTGCACATCAGCCTTTGGGCGATTGCCAAGgttggttggcacacaccatctctgaaaatcttgatctctgatctctggtctttgtcgaattcagttgagattcttgaatgattcttatgtttgtgaatgcttttgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22935898|gb|BU572173.1|BU572173
EST:     TGGCGTACAACGAGTACGTCGTGCACTTCAGCCTGTGGGCCATCGCCAAG                         GCTCCCCTGATCATCGGCTGCGACGTGACGAGAGTCTCCAATGAGACGCTG
genomic: TGGCGTACAACGAGTACGTCGTGCACTTCAGCCTCTGGGCCATCGCCAAGgtgcgcgcgc ... tttttgacagGCTCCCCTGGTCATCGGCTGCGACGTGACGAGAGTCTCCAATGAGACGCTC
EST: gi|78113279|gb|DV531671.1|DV531671
EST:     TGGCGTACAACGAGTACGTCGTGCACTTCAGCCTCTGGGGCATCGCCAAG                         GCTCCCCTGGTCATCGGC
genomic: TGGCGTACAACGAGTACGTCGTGCACTTCAGCCTCTGGGCCATCGCCAAGgtgcgcgcgc ... tttttgacagGCTCCCCTGGTCATCGGC
EST: gi|71443279|gb|DR824329.1|DR824329
EST:     TGGCGTACAACGAGTACGTCGTGCACTTCAGCCTCTGGGCCATCGCCAAG                         GCTCCCCTGGTCATCGGCTGCGACGTGACGAGAGTCTCCAATGAGACGCTC
genomic: TGGCGTACAACGAGTACGTCGTGCACTTCAGCCTCTGGGCCATCGCCAAGgtgcgcgcgc ... tttttgacagGCTCCCCTGGTCATCGGCTGCGACGTGACGAGAGTCTCCAATGAGACGCTC
EST: gi|86465787|gb|DY232160.1|DY232160
EST:     TGGCGTACAACGAGTACGTCGTGCACTTCAGCCTCTGGGCCATCGCCAAG                         GCTCCCCTGGTCATCGGCTGCGACGTGACGAGAGTCTCCAATGAGACGCTC
genomic: TGGCGTACAACGAGTACGTCGTGCACTTCAGCCTCTGGGCCATCGCCAAGgtgcgcgcgc ... tttttgacagGCTCCCCTGGTCATCGGCTGCGACGTGACGAGAGTCTCCAATGAGACGCTC
EST: gi|78113278|gb|DV531670.1|DV531670
EST:     TGGCGTACAACGAGTACGTCGTGCACTTCAGCCTCTGGGCCATCGCCAAG                         GCTCCCCTGGTCATCGGCTGCGACGTGACGAGAGTCTCCAATGAGACGCTC
genomic: TGGCGTACAACGAGTACGTCGTGCACTTCAGCCTCTGGGCCATCGCCAAGgtgcgcgcgc ... tttttgacagGCTCCCCTGGTCATCGGCTGCGACGTGACGAGAGTCTCCAATGAGACGCTC
EST: gi|86466262|gb|DY232634.1|DY232634
EST:     TGGCGTACAACGAGTACGTCGTGCACTTCAGCCTCTGGGCCATCTCCAAG                         GCTCCCCTGGTCATCGGCTGCGACGTGACGAGAGTCTCCAATGAGACGCTC
genomic: TGGCGTACAACGAGTACGTCGTGCACTTCAGCCTCTGGGCCATCGCCAAGgtgcgcgcgc ... tttttgacagGCTCCCCTGGTCATCGGCTGCGACGTGACGAGAGTCTCCAATGAGACGCTC
EST: gi|22472587|gb|BU037067.1|BU037067
EST:     TGGCGTACAACGAGTACGTCGTGCACTTCAGCCTGTGGGCCATCGCCAAG                         GCTCCCCTGATCATCGGCTGCGACGT
genomic: TGGCGTACAACGAGTACGTCGTGCACTTCAGCCTCTGGGCCATCGCCAAGgtgcgcgcgc ... tttttgacagGCTCCCCTGGTCATCGGCTGCGACGT
EST: gi|71443417|gb|DR824467.1|DR824467
EST:     TGGCGTACAACGAGTACGTCGTGCACTTCAGCCTCTGGGCCATCGCCAAG                         GCTCCCCTGGTCATCGGCTGCGACGTGACGAGAGTCTCCAATGAGACGCTC
genomic: TGGCGTACAACGAGTACGTCGTGCACTTCAGCCTCTGGGCCATCGCCAAGgtgcgcgcgc ... tttttgacagGCTCCCCTGGTCATCGGCTGCGACGTGACGAGAGTCTCCAATGAGACGCTC
EST: gi|50334851|gb|CO529977.1|CO529977
EST:     TGGCGTACAACGAGTACGTCGTGCACTTCAGCCTTTGGGCCATCGCCAAG                         GCTCCCCTGGTCATCGGCTGCGACGTGACGAGAGTCTCCAATGAGACGCTC
genomic: TGGCGTACAACGAGTACGTCGTGCACTTCAGCCTCTGGGCCATCGCCAAGgtgcgcgcgc ... tttttgacagGCTCCCCTGGTCATCGGCTGCGACGTGACGAGAGTCTCCAATGAGACGCTC
EST: gi|60357458|gb|DN224431.1|DN224431
EST:     TGGCGTACAACGAGTACGTCGTGCACTTCAGCCTCTGGGCCATCGCCAAG                         GCTCCCCTGGTCATCGGCTGCGACGTGACGAGAGTCTCCAATGAGACGCTC
genomic: TGGCGTACAACGAGTACGTCGTGCACTTCAGCCTCTGGGCCATCGCCAAGgtgcgcgcgc ... tttttgacagGCTCCCCTGGTCATCGGCTGCGACGTGACGAGAGTCTCCAATGAGACGCTC
EST: gi|91874598|gb|EB404555.1|EB404555
EST:     TGGCGTACAACGAGTACGTCGTGCACTTCAGCCTCTGGGCCATCGCCAAG                         GCTCCCCTGGTCATCGGTTGGGACGTGACGAGAGTCTCCAATGAGACGCTC
genomic: TGGCGTACAACGAGTACGTCGTGCACTTCAGCCTCTGGGCCATCGCCAAGgtgcgcgcgc ... tttttgacagGCTCCCCTGGTCATCGGCTGCGACGTGACGAGAGTCTCCAATGAGACGCTC
EST: gi|60338146|gb|DN205119.1|DN205119
EST:     TGGCGTACAACGAGTACGTCGTGCACTTCAGCCTCTGGGCCATCGCCAAG                         GCTCCCCTGGTCATCGGCTGCGACGTGACGAGAGTCTCCAATGAGACGCTC
genomic: TGGCGTACAACGAGTACGTCGTGCACTTCAGCCTCTGGGCCATCGCCAAGgtgcgcgcgc ... tttttgacagGCTCCCCTGGTCATCGGCTGCGACGTGACGAGAGTCTCCAATGAGACGCTC
EST: gi|71318125|gb|DR795824.1|DR795824
EST:     TGGCGTACAACGAGTACGTCGTGCACTTCAGCCTCTGGGCCATCGCCAAG                         GCTCCCCTGGTCATCGGCTGCGACGTGACGAGAGTCTCCAATGAGACGCTC
genomic: TGGCGTACAACGAGTACGTCGTGCACTTCAGCCTCTGGGCCATCGCCAAGgtgcgcgcgc ... tttttgacagGCTCCCCTGGTCATCGGCTGCGACGTGACGAGAGTCTCCAATGAGACGCTC
EST: gi|91054334|gb|EB164752.1|EB164752
EST:     TGGCGTACAACGAGTACGTCGTGCACTTCAGCCTCTGGGCCATCGCCAAG                         GCTCCCCTGGTCATCGGCTGCGACGTGACGAGAGTCTCCAATGAGACGCTC
genomic: TGGCGTACAACGAGTACGTCGTGCACTTCAGCCTCTGGGCCATCGCCAAGgtgcgcgcgc ... tttttgacagGCTCCCCTGGTCATCGGCTGCGACGTGACGAGAGTCTCCAATGAGACGCTC
EST: gi|89763955|gb|DY690933.1|DY690933
EST:     TACAACGAGTACGTCGTGCACTTCAGCCTCTGGGCCATCGCCAAG                         GCTCCCCTGGTCATCGGCTGCGACGTGACGAGAGTCTCCAATGAGACGCTC
genomic: TACAACGAGTACGTCGTGCACTTCAGCCTCTGGGCCATCGCCAAGgtgcgcgcgc ... tttttgacagGCTCCCCTGGTCATCGGCTGCGACGTGACGAGAGTCTCCAATGAGACGCTC
EST: gi|149055655|gb|EE156360.2|EE156360
EST:     TGGCGTACAACGAGTACGTCGTGCACTTCAGCCTCTGGGCCATCGCCAAG                         GCTCCCCTGGTCATCGGCTGCGACGTGACGAGAGTCTCCAATGAGACGCTC
genomic: TGGCGTACAACGAGTACGTCGTGCACTTCAGCCTCTGGGCCATCGCCAAGgtgcgcgcgc ... tttttgacagGCTCCCCTGGTCATCGGCTGCGACGTGACGAGAGTCTCCAATGAGACGCTC
EST: gi|87156914|gb|DY401703.1|DY401703
EST:     TGGCGTACAACGAGTACGTCGTGCACTTCAGCCTGTGGGCCATCGCCAAG                         GCTCCCCTGATCATCGGCTGCGACGTGACGAGAGTCTCCAATGAGACGCTG
genomic: TGGCGTACAACGAGTACGTCGTGCACTTCAGCCTCTGGGCCATCGCCAAGgtgcgcgcgc ... tttttgacagGCTCCCCTGGTCATCGGCTGCGACGTGACGAGAGTCTCCAATGAGACGCTC
EST: gi|87157241|gb|DY402030.1|DY402030
EST:     TGGCGTACAACGAGTACGTCGTGCACTTCAGCCTGTGGGCCATCGCCAAG                         GCTCCCCTGATCATCGGCTGCGACGTGACGAGAGTCTCCAATGAGACGCTG
genomic: TGGCGTACAACGAGTACGTCGTGCACTTCAGCCTCTGGGCCATCGCCAAGgtgcgcgcgc ... tttttgacagGCTCCCCTGGTCATCGGCTGCGACGTGACGAGAGTCTCCAATGAGACGCTC
EST: gi|23199550|gb|BU582115.1|BU582115
EST:     TGGCGTACAACGAGTACGTCGTGCACTTCAGCCTGTGGGCCATCGCCAAG                         GCTCCCCTGATCATCGGCTGCGACGTGACGAGAGTCTCCAATGAGACGCTG
genomic: TGGCGTACAACGAGTACGTCGTGCACTTCAGCCTCTGGGCCATCGCCAAGgtgcgcgcgc ... tttttgacagGCTCCCCTGGTCATCGGCTGCGACGTGACGAGAGTCTCCAATGAGACGCTC
EST: gi|78075208|gb|DV503642.1|DV503642
EST:     AGTACGTCGTGCACTTCAGCCTCTGGGCCATCGCCAAG                         GCTCCCCTGGTCATTGGGTGGGACGTGACGAGAGTCTCCAATGAGACGCTG
genomic: AGTACGTCGTGCACTTCAGCCTCTGGGCCATCGCCAAGgtgcgcgcgc ... tttttgacagGCTCCCCTGGTCATCGGCTGCGACGTGACGAGAGTCTCCAATGAGACGCTC
EST: gi|78088430|gb|DV516823.1|DV516823
EST:     TGGCGTACAACGAGTACGTCGTGCACTTCAGCCTCTGGGCCATCGCCAAG                         GCTCCCCTGGTCATCGGCTGCGACGTGACGAGAGTCTCCAATGAGACGCTC
genomic: TGGCGTACAACGAGTACGTCGTGCACTTCAGCCTCTGGGCCATCGCCAAGgtgcgcgcgc ... tttttgacagGCTCCCCTGGTCATCGGCTGCGACGTGACGAGAGTCTCCAATGAGACGCTC
EST: gi|89763171|gb|DY690487.1|DY690487
EST:     CCATCGCCAAG                         GCTCCCCTGGTCATGGGGTGGGACGTGACGAGAGTTTCCAATGAGACGCTC
genomic: CCATCGCCAAGgtgcgcgcgc ... tttttgacagGCTCCCCTGGTCATCGGCTGCGACGTGACGAGAGTCTCCAATGAGACGCTC