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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACCCTGACATGCTGGAGGTCGGGAACGGAGGCATGGCGTACAACGAGTACGTCGTGCACTTCAGCCTCTGGGCCATCGCCAAGgtgcgcgcgcgtgaatcatttcctttccgggctatgctcacagctaccgatgagagttattattggcgccaatcttttttgacag

Basic information

species Zea mays
transcript GRMZM2G146463_T01
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G146463_T02 (Zea mays), 5'ss of exon 12
lower sequence: LOC_Os07g26900.1 (Oryza sativa), 5'ss of exon 10
ACCCTGACATGCTGGAGGTCGGGAACGGAGGCATGGCGTACAACGAGTACGTCGTGCACTTCAGCCTCTGGGCCATCGCCAAGgtgcgcgcgcgtgaatcatttcc-----------tttccgggctatgctc----acagctaccgatgagagttattattggcgccaatcttttttgacag--------
| |||||||||||||||||||| || ||||| ||| || || ||||||||||||||||| ||||||| ||||| || ||||||||  |   ||    | ||| ||            | || |  || || ||     |   | | | ||||| |  | | ||   |  || ||| |  |           
ATCCTGACATGCTGGAGGTCGGCAATGGAGGGATGACGAACGACGAGTACGTCGTGCACATCAGCCTTTGGGCGATTGCCAAGgttggttggcacacaccatctctgaaaatcttgatctctgatctctggtctttgtcgaattcagttgagattcttgaatgattcttatgtttgtgaatgcttttgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78113279|gb|DV531671.1|DV531671
EST:     TGGCGTACAACGAGTACGTCGTGCACTTCAGCCTCTGGGGCATCGCCAAG                         GCTCCCCTGGTCATCGGC
genomic: TGGCGTACAACGAGTACGTCGTGCACTTCAGCCTCTGGGCCATCGCCAAGgtgcgcgcgc ... tttttgacagGCTCCCCTGGTCATCGGC
EST: gi|23199550|gb|BU582115.1|BU582115
EST:     TGGCGTACAACGAGTACGTCGTGCACTTCAGCCTGTGGGCCATCGCCAAG                         GCTCCCCTGATCATCGGCTGCGACGTGACGAGAGTCTCCAATGAGACGCTG
genomic: TGGCGTACAACGAGTACGTCGTGCACTTCAGCCTCTGGGCCATCGCCAAGgtgcgcgcgc ... tttttgacagGCTCCCCTGGTCATCGGCTGCGACGTGACGAGAGTCTCCAATGAGACGCTC
EST: gi|22472587|gb|BU037067.1|BU037067
EST:     TGGCGTACAACGAGTACGTCGTGCACTTCAGCCTGTGGGCCATCGCCAAG                         GCTCCCCTGATCATCGGCTGCGACGT
genomic: TGGCGTACAACGAGTACGTCGTGCACTTCAGCCTCTGGGCCATCGCCAAGgtgcgcgcgc ... tttttgacagGCTCCCCTGGTCATCGGCTGCGACGT
EST: gi|22935898|gb|BU572173.1|BU572173
EST:     TGGCGTACAACGAGTACGTCGTGCACTTCAGCCTGTGGGCCATCGCCAAG                         GCTCCCCTGATCATCGGCTGCGACGTGACGAGAGTCTCCAATGAGACGCTG
genomic: TGGCGTACAACGAGTACGTCGTGCACTTCAGCCTCTGGGCCATCGCCAAGgtgcgcgcgc ... tttttgacagGCTCCCCTGGTCATCGGCTGCGACGTGACGAGAGTCTCCAATGAGACGCTC