1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
AAATGGAAAGATGCAGATGGAGGAGACAGACACAGATGATAGCAACTCGTTTGTCACTTCTGTAAAAGCAAAAGCAAAACGTGTACTGTTGAAGGCAAAGgtcattggctttctttctggatctgattccaccattgatctgtcacaaatctgcctctcacctgatcttgtttgcag
species | Zea mays |
transcript | GRMZM2G144254_T06 |
intron # | 12 |
splice site | 5' |
intron type | U2 |
EST: TTGTCACTTCTGTAAAAGCAAAAGCAAAACGTGTACTGTTGAAGGCAAAG TCTGCATGCTCCATGTCCCTTGGCCTTGGGGAGGACACAATAAGCGCTTCGEST: gi|88756245|gb|DY540386.1|DY540386
genomic: TTGTCACTTCTGTAAAAGCAAAAGCAAAACGTGTACTGTTGAAGGCAAAGgtcattggct ... ttgtttgcagTCTGCATGCTCCATGTCCCTTGGCCTTGGGGAGGACACAATAAGCGCTTCG
EST: TTGTCACTTCTGTAAAAGCAAAAGCAAAACGTGTACTGTTGAAGGCAAAG TCTGCATGCTCCATGTCCCTTGGCCTTGGGGAGGACACAATAAGCGCTTCGEST: gi|93281607|gb|EB673871.1|EB673871
genomic: TTGTCACTTCTGTAAAAGCAAAAGCAAAACGTGTACTGTTGAAGGCAAAGgtcattggct ... ttgtttgcagTCTGCATGCTCCATGTCCCTTGGCCTTGGGGAGGACACAATAAGCGCTTCG
EST: TTGTCACTTCTGTAAAAGCAAAAGCAAAACGTGTACTGTTGAAGGCAAAG TCTGCATGCTCCATGTCCCTTGGCCTTGGGGAGGACACAATAAGCGCTTCGEST: gi|19769516|gb|BQ034237.1|BQ034237
genomic: TTGTCACTTCTGTAAAAGCAAAAGCAAAACGTGTACTGTTGAAGGCAAAGgtcattggct ... ttgtttgcagTCTGCATGCTCCATGTCCCTTGGCCTTGGGGAGGACACAATAAGCGCTTCG
EST: AAGCACAACGTGTACTGTTGAAGGCAAAG TCTGCATGCTCCATGTCCCTTGGCCTTGGGGAGGACCCAATAAGCGCTTCGEST: gi|32808432|gb|CD960666.1|CD960666
genomic: AAGCAAAACGTGTACTGTTGAAGGCAAAGgtcattggct ... ttgtttgcagTCTGCATGCTCCATGTCCCTTGGCCTTGGGGAGGACACAATAAGCGCTTCG
EST: TTGTCACTTCTGTAAAAGCAAAAGCAAAACGTGTACTGTTGAAGGCAAAG TCTGCATGCTCCATGTCCCTTGGCCTTGGGGAGGACACAATAAGCGCTTCGEST: gi|6056875|gb|AW091280.1|AW091280
genomic: TTGTCACTTCTGTAAAAGCAAAAGCAAAACGTGTACTGTTGAAGGCAAAGgtcattggct ... ttgtttgcagTCTGCATGCTCCATGTCCCTTGGCCTTGGGGAGGACACAATAAGCGCTTCG
EST: TTGTCACTTCTGTAAAAGCAAAAGCAAAACGTGTACTGTTGAAGGCAAAG TCTGCATGCTCCATGTCCCTTGGCCTTGGGGAGGACACAATAAGCGCTTCGEST: gi|88756206|gb|DY540347.1|DY540347
genomic: TTGTCACTTCTGTAAAAGCAAAAGCAAAACGTGTACTGTTGAAGGCAAAGgtcattggct ... ttgtttgcagTCTGCATGCTCCATGTCCCTTGGCCTTGGGGAGGACACAATAAGCGCTTCG
EST: TTGTCACTTCTGTAAAAGCAAAAGCAAAACGTGTACTGTTGAAGGCAAAG TCTGCATGCTCCATGTCCCTTGGCCTTGGGGAGGACACAATAAGCGCTTCGEST: gi|6828189|gb|AW331832.1|AW331832
genomic: TTGTCACTTCTGTAAAAGCAAAAGCAAAACGTGTACTGTTGAAGGCAAAGgtcattggct ... ttgtttgcagTCTGCATGCTCCATGTCCCTTGGCCTTGGGGAGGACACAATAAGCGCTTCG
EST: TTGTCACTTCTGTAAAAGCAAAAGCAAAACGTGTACTGTTGAAGGCAAAG TCTGCATGCTCCATGTCCCTTGGCCTTGGGGAGGACACAATAAGCGCTTCGEST: gi|6227147|gb|AW155676.1|AW155676
genomic: TTGTCACTTCTGTAAAAGCAAAAGCAAAACGTGTACTGTTGAAGGCAAAGgtcattggct ... ttgtttgcagTCTGCATGCTCCATGTCCCTTGGCCTTGGGGAGGACACAATAAGCGCTTCG
EST: TTGTCACTTCTGTAAAAGCAAAAGCAAAACGTGTACTGTTGAAGGCAAAG TCTGCATGCTCCATGTCCCTTGGCCTTEST: gi|32792658|gb|CD944894.1|CD944894
genomic: TTGTCACTTCTGTAAAAGCAAAAGCAAAACGTGTACTGTTGAAGGCAAAGgtcattggct ... ttgtttgcagTCTGCATGCTCCATGTCCCTTGGCCTT
EST: TTGTCACTTCTGTAAAAGCAAAAGCAAAACGTGTACTGTTGAAGGCAAAG TCTGCATGCTCCATGTCCCTTGGCCTTGGGGAGGACACAATAAGCGCTTCGEST: gi|60351321|gb|DN218294.1|DN218294
genomic: TTGTCACTTCTGTAAAAGCAAAAGCAAAACGTGTACTGTTGAAGGCAAAGgtcattggct ... ttgtttgcagTCTGCATGCTCCATGTCCCTTGGCCTTGGGGAGGACACAATAAGCGCTTCG
EST: TTGTCACTTCTGTAAAAGCAAAAGCAAAACGTGTACTGTTGAAGGCAAAG TCTGCATGCTCCATGTCCCTTGGCCTTGGGGAGGACACAATAAGCGCTTCGEST: gi|113701592|gb|EE679096.1|EE679096
genomic: TTGTCACTTCTGTAAAAGCAAAAGCAAAACGTGTACTGTTGAAGGCAAAGgtcattggct ... ttgtttgcagTCTGCATGCTCCATGTCCCTTGGCCTTGGGGAGGACACAATAAGCGCTTCG
EST: TTGTCACTTCTGTAAAAGCAAAAGCAAAACGTGTACTGTTGAAGGCAAAG TCTGCATGCTCCATGTCCCTTGGCCTTGGGGAGGACACAATAAGCGCTTCGEST: gi|40334752|gb|CK368822.1|CK368822
genomic: TTGTCACTTCTGTAAAAGCAAAAGCAAAACGTGTACTGTTGAAGGCAAAGgtcattggct ... ttgtttgcagTCTGCATGCTCCATGTCCCTTGGCCTTGGGGAGGACACAATAAGCGCTTCG
EST: CACTTCTGTAAAAGCAAAAGCAAAACGTGTACTGTTGAAGGCAAAG TCTGCATGCTCCATGTCCCTTGGCCTTGGGGAGGACACAATAAGCGCTTCGEST: gi|60350817|gb|DN217790.1|DN217790
genomic: CACTTCTGTAAAAGCAAAAGCAAAACGTGTACTGTTGAAGGCAAAGgtcattggct ... ttgtttgcagTCTGCATGCTCCATGTCCCTTGGCCTTGGGGAGGACACAATAAGCGCTTCG
EST: TTGTCACTTCTGTAAAAGCAAAAGCAAAACGTGTACTGTTGAAGGCAAAG TCTGCATGCTCCATGTCCCTTGGCCTTGGGGAGGACACAATAAGCGCTTCGEST: gi|37378198|gb|CF625769.1|CF625769
genomic: TTGTCACTTCTGTAAAAGCAAAAGCAAAACGTGTACTGTTGAAGGCAAAGgtcattggct ... ttgtttgcagTCTGCATGCTCCATGTCCCTTGGCCTTGGGGAGGACACAATAAGCGCTTCG
EST: TTGTCACTTCTGTAAAAGCAAAAGCAAAACGTGTACTGTTGAAGGCAAAG TCTGCATGCTCCATGTCCCTTGGCCTTGGGGAGGACACAATAAGCGCTTCGEST: gi|60356320|gb|DN223293.1|DN223293
genomic: TTGTCACTTCTGTAAAAGCAAAAGCAAAACGTGTACTGTTGAAGGCAAAGgtcattggct ... ttgtttgcagTCTGCATGCTCCATGTCCCTTGGCCTTGGGGAGGACACAATAAGCGCTTCG
EST: TTGTCACTTCTGTAAAAGCAAAAGCAAAACGTGTACTGTTGAAGGCAAAG TCTGCATGCTCCATGTCCCTTGGCCTTGGGGAGGACACAATAAGCGCTTCGEST: gi|19822362|gb|BQ048386.1|BQ048386
genomic: TTGTCACTTCTGTAAAAGCAAAAGCAAAACGTGTACTGTTGAAGGCAAAGgtcattggct ... ttgtttgcagTCTGCATGCTCCATGTCCCTTGGCCTTGGGGAGGACACAATAAGCGCTTCG
EST: TTGTCACTTCTGTAAAAGCAAAAGCAAAACGTGTACTGTTGAAGGCAAAG TCTGCATGCTCCATGTCCCTTGGCCTTGGGGAGGACACAATAAGCGCTTCGEST: gi|19770035|gb|BQ034756.1|BQ034756
genomic: TTGTCACTTCTGTAAAAGCAAAAGCAAAACGTGTACTGTTGAAGGCAAAGgtcattggct ... ttgtttgcagTCTGCATGCTCCATGTCCCTTGGCCTTGGGGAGGACACAATAAGCGCTTCG
EST: TTGTCACTTCTGTAAAAGCAAAAGCAGAACGTGTACTGTTGAAGGCAAAG TCTGCATGCTCCATGTCCCTTGGCCTTGGGGAGGACACAATAAGCGCTTCGEST: gi|5713925|gb|AI943910.1|AI943910
genomic: TTGTCACTTCTGTAAAAGCAAAAGCAAAACGTGTACTGTTGAAGGCAAAGgtcattggct ... ttgtttgcagTCTGCATGCTCCATGTCCCTTGGCCTTGGGGAGGACACAATAAGCGCTTCG
EST: TTGTCACTTCTGTAAAAGCAAAAGCAAAACGTGTACTGTTGAAGGCAAAG TCTGCATGCTCCATGTCCCTTGGCCTTGGGGAGGACACAATAAGCGCTTCGEST: gi|19822356|gb|BQ048380.1|BQ048380
genomic: TTGTCACTTCTGTAAAAGCAAAAGCAAAACGTGTACTGTTGAAGGCAAAGgtcattggct ... ttgtttgcagTCTGCATGCTCCATGTCCCTTGGCCTTGGGGAGGACACAATAAGCGCTTCG
EST: TTGTCACTTCTGTAAAAGCAAAAGCAAAACGTGTACTGTTGAAGGCAAAG TCTGCATGCTCCATGTCCCTTGGCCTTGGGGAGGACACAATAAGCGCTTCGEST: gi|60399257|gb|DN232071.1|DN232071
genomic: TTGTCACTTCTGTAAAAGCAAAAGCAAAACGTGTACTGTTGAAGGCAAAGgtcattggct ... ttgtttgcagTCTGCATGCTCCATGTCCCTTGGCCTTGGGGAGGACACAATAAGCGCTTCG
EST: TTGTCACTTCTGTAAAAGCAAAAGCAAAACGTGTACTGTTGAAGGCAAAG TCTGCATGCTCCATGTCCCTTGGCCTTGGGGAGGACACAATAAGCGCTTCG
genomic: TTGTCACTTCTGTAAAAGCAAAAGCAAAACGTGTACTGTTGAAGGCAAAGgtcattggct ... ttgtttgcagTCTGCATGCTCCATGTCCCTTGGCCTTGGGGAGGACACAATAAGCGCTTCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAATGGAAAGATGCAGATGGAGGAGACAGACACAGATGATAGCAACTCGTTTGTCACTTCTGTAAAAGCAAAAGCAAAACGTGTACTGTTGAAGGCAAAGgtcattggctttctttctggatctgattccaccattgatctgtcacaaatctgcctctcacctgatcttgtttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG