1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
TTGAAGCATTCTTAGCCTGCGATAGGAACGAGGAGCTAGCAGCAAACTATCTCCTTGAGCATGCTGGTGAGGAAGATTAAGCGGGAGTAGTTTTCATACGgtgagaactctgctatcctctggttggttaccctccttaacatatatggcaagtggctcactgtggggtgatttcctttttttcttcttttgaaccttgcctctcgtcgacatctgaccgacattgatcaagattttttttag
species | Zea mays |
transcript | GRMZM2G143462_T03 |
intron # | 12 |
splice site | 5' |
intron type | U2 |
EST: CTCCTTGAGCATGCTGGTGAGGAAGATTAAGCGGGAGTAGTTTTCATACG TACCGAGTGACGAAGAGTTGATATGGAGCTGACGATCATTTGAATTGATTTEST: gi|78111155|gb|DV529552.1|DV529552
genomic: CTCCTTGAGCATGCTGGTGAGGAAGATTAAGCGGGAGTAGTTTTCATACGgtgagaactc ... ttttttttagTACCGAGTGACGAAGAGTTGATATGGAGCTGACGATCATTTGAATTGATTT
EST: CTCCTTGAGCATGCTGGTGAGGAAGATTAAGCGGGAGTAGTTTTCATACGANNNNNNNNAGEST: gi|71771538|gb|DR969475.1|DR969475
genomic: CTCCTTGAGCATGCTGGTGAGGAAGATTAAGCGGGAGTAGTTTTCATAC-----------Ggtgagaactc ...
EST: CTCCTTGAGCATGCTGGTGAGGAAGATTAAGCGGGAGTAGTTTTCATACG AEST: gi|71771538|gb|DR969475.1|DR969475
genomic: CTCCTTGAGCATGCTGGTGAGGAAGATTAAGCGGGAGTAGTTTTCATACGgtgagaactc ... ttttttttag-
EST: CTCCTTGAGCATGCTGGTGAGGAAGATTAAGCGGGAGTAGTTTTCATACG AEST: gi|71771538|gb|DR969475.1|DR969475
genomic: CTCCTTGAGCATGCTGGTGAGGAAGATTAAGCGGGAGTAGTTTTCATACGgtgagaactc ... ttttttttag-
EST: CTCCTTGAGCATGCTGGTGAGGAAGATTAAGCGGGAGTAGTTTTCATACG AEST: gi|71771538|gb|DR969475.1|DR969475
genomic: CTCCTTGAGCATGCTGGTGAGGAAGATTAAGCGGGAGTAGTTTTCATACGgtgagaactc ... ttttttttag-
EST: CTCCTTGAGCATGCTGGTGAGGAAGATTAAGCGGGAGTAGTTTTCATACG AEST: gi|71771538|gb|DR969475.1|DR969475
genomic: CTCCTTGAGCATGCTGGTGAGGAAGATTAAGCGGGAGTAGTTTTCATACGgtgagaactc ... ttttttttag-
EST: CTCCTTGAGCATGCTGGTGAGGAAGATTAAGCGGGAGTAGTTTTCATACG AEST: gi|71771538|gb|DR969475.1|DR969475
genomic: CTCCTTGAGCATGCTGGTGAGGAAGATTAAGCGGGAGTAGTTTTCATACGgtgagaactc ... ttttttttag-
EST: CTCCTTGAGCATGCTGGTGAGGAAGATTAAGCGGGAGTAGTTTTCATACG AEST: gi|71771538|gb|DR969475.1|DR969475
genomic: CTCCTTGAGCATGCTGGTGAGGAAGATTAAGCGGGAGTAGTTTTCATACGgtgagaactc ... ttttttttag-
EST: CTCCTTGAGCATGCTGGTGAGGAAGATTAAGCGGGAGTAGTTTTCATACG AEST: gi|71771538|gb|DR969475.1|DR969475
genomic: CTCCTTGAGCATGCTGGTGAGGAAGATTAAGCGGGAGTAGTTTTCATACGgtgagaactc ... ttttttttag-
EST: CTCCTTGAGCATGCTGGTGAGGAAGATTAAGCGGGAGTAGTTTTCATACG AEST: gi|71771538|gb|DR969475.1|DR969475
genomic: CTCCTTGAGCATGCTGGTGAGGAAGATTAAGCGGGAGTAGTTTTCATACGgtgagaactc ... ttttttttag-
EST: CTCCTTGAGCATGCTGGTGAGGAAGATTAAGCGGGAGTAGTTTTCATACG AEST: gi|71771538|gb|DR969475.1|DR969475
genomic: CTCCTTGAGCATGCTGGTGAGGAAGATTAAGCGGGAGTAGTTTTCATACGgtgagaactc ... ttttttttag-
EST: CTCCTTGAGCATGCTGGTGAGGAAGATTAAGCGGGAGTAGTTTTCATACG AEST: gi|71771538|gb|DR969475.1|DR969475
genomic: CTCCTTGAGCATGCTGGTGAGGAAGATTAAGCGGGAGTAGTTTTCATACGgtgagaactc ... ttttttttag-
EST: CTCCTTGAGCATGCTGGTGAGGAAGATTAAGCGGGAGTAGTTTTCATACG AEST: gi|71771538|gb|DR969475.1|DR969475
genomic: CTCCTTGAGCATGCTGGTGAGGAAGATTAAGCGGGAGTAGTTTTCATACGgtgagaactc ... ttttttttag-
EST: CTCCTTGAGCATGCTGGTGAGGAAGATTAAGCGGGAGTAGTTTTCATACG AEST: gi|71764241|gb|DR962178.1|DR962178
genomic: CTCCTTGAGCATGCTGGTGAGGAAGATTAAGCGGGAGTAGTTTTCATACGgtgagaactc ... ttttttttag-
EST: CTCCTTGAGCATGCTGGTGAGGAAGATTAAGCGGGAGTAGTTTTCATACG AEST: gi|71764241|gb|DR962178.1|DR962178
genomic: CTCCTTGAGCATGCTGGTGAGGAAGATTAAGCGGGAGTAGTTTTCATACGgtgagaactc ... ttttttttag-
EST: CTCCTTGAGCATGCTGGTGAGGAAGATTAAGCGGGAGTAGTTTTCATACG AEST: gi|71764241|gb|DR962178.1|DR962178
genomic: CTCCTTGAGCATGCTGGTGAGGAAGATTAAGCGGGAGTAGTTTTCATACGgtgagaactc ... ttttttttag-
EST: CTCCTTGAGCATGCTGGTGAGGAAGATTAAGCGGGAGTAGTTTTCATACG AEST: gi|71764241|gb|DR962178.1|DR962178
genomic: CTCCTTGAGCATGCTGGTGAGGAAGATTAAGCGGGAGTAGTTTTCATACGgtgagaactc ... ttttttttag-
EST: CTCCTTGAGCATGCTGGTGAGGAAGATTAAGCGGGAGTAGTTTTCATACG AEST: gi|71764241|gb|DR962178.1|DR962178
genomic: CTCCTTGAGCATGCTGGTGAGGAAGATTAAGCGGGAGTAGTTTTCATACGgtgagaactc ... ttttttttag-
EST: CTCCTTGAGCATGCTGGTGAGGAAGATTAAGCGGGAGTAGTTTTCATACG AEST: gi|71764241|gb|DR962178.1|DR962178
genomic: CTCCTTGAGCATGCTGGTGAGGAAGATTAAGCGGGAGTAGTTTTCATACGgtgagaactc ... ttttttttag-
EST: CTCCTTGAGCATGCTGGTGAGGAAGATTAAGCGGGAGTAGTTTTCATACG AEST: gi|71764241|gb|DR962178.1|DR962178
genomic: CTCCTTGAGCATGCTGGTGAGGAAGATTAAGCGGGAGTAGTTTTCATACGgtgagaactc ... ttttttttag-
EST: CTCCTTGAGCATGCTGGTGAGGAAGATTAAGCGGGAGTAGTTTTCATACG AEST: gi|71764241|gb|DR962178.1|DR962178
genomic: CTCCTTGAGCATGCTGGTGAGGAAGATTAAGCGGGAGTAGTTTTCATACGgtgagaactc ... ttttttttag-
EST: CTCCTTGAGCATGCTGGTGAGGAAGATTAAGCGGGAGTAGTTTTCATACG AEST: gi|71764241|gb|DR962178.1|DR962178
genomic: CTCCTTGAGCATGCTGGTGAGGAAGATTAAGCGGGAGTAGTTTTCATACGgtgagaactc ... ttttttttag-
EST: CTCCTTGAGCATGCTGGTGAGGAAGATTAAGCGGGAGTAGTTTTCATACG AEST: gi|71764241|gb|DR962178.1|DR962178
genomic: CTCCTTGAGCATGCTGGTGAGGAAGATTAAGCGGGAGTAGTTTTCATACGgtgagaactc ... ttttttttag-
EST: CTCCTTGAGCATGCTGGTGAGGAAGATTAAGCGGGAGTAGTTTTCATACG AEST: gi|71764241|gb|DR962178.1|DR962178
genomic: CTCCTTGAGCATGCTGGTGAGGAAGATTAAGCGGGAGTAGTTTTCATACGgtgagaactc ... ttttttttag-
EST: CTCCTTGAGCATGCTGGTGAGGAAGATTAAGCGGGAGTAGTTTTCATACG AEST: gi|71764241|gb|DR962178.1|DR962178
genomic: CTCCTTGAGCATGCTGGTGAGGAAGATTAAGCGGGAGTAGTTTTCATACGgtgagaactc ... ttttttttag-
EST: CTCCTTGAGCATGCTGGTGAGGAAGATTAAGCGGGAGTAGTTTTCATACG AEST: gi|60338543|gb|DN205516.1|DN205516
genomic: CTCCTTGAGCATGCTGGTGAGGAAGATTAAGCGGGAGTAGTTTTCATACGgtgagaactc ... ttttttttag-
EST: CTCCTTGAGCATGCTGGTGAGGAAGATTAAGCGGGAGTAGTTTTCATACGANNNNNNNNAG
genomic: CTCCTTGAGCATGCTGGTGAGGAAGATTAAGCGGGAGTAGTTTTCATAC-----------Ggtgagaactc ...
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTGAAGCATTCTTAGCCTGCGATAGGAACGAGGAGCTAGCAGCAAACTATCTCCTTGAGCATGCTGGTGAGGAAGATTAAGCGGGAGTAGTTTTCATACGgtgagaactctgctatcctctggttggttaccctccttaacatatatggcaagtggctcactgtggggtgatttcctttttttcttcttttgaaccttgcctctcgtcgacatctgaccgacattgatcaagattttttttag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA