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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACGCCAAGTTCTGGAATGAGTTTGGCAAATCAATCAAGCTGGGTATCATCGAAGACGCGACTAACAGAAACCGCCTTGCGAAGCTTCTTAGATTTGAGAGgttggtttgtccagcagaattgtcctactcttctttaagttttgggtaaaagagaactgtacctcatatttgctgcttgcttcag

Basic information

species Zea mays
transcript GRMZM2G141931_T02
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G141931_T02 (Zea mays), 5'ss of exon 12
lower sequence: LOC_Os06g50300.1 (Oryza sativa), 5'ss of exon 12
ACGCCAAGTTCTGGAATGAGTTTGGCAAATCAATCAAGCTGGGTATCATCGAAGACGCGACTAACAGAAACCGCCTTGCGAAGCTTCTTAGATTTGAGAGgttggtttgtccagcagaattgtcctactcttctttaagttttgggtaaaagagaactgtacctcatatttgctgcttgcttcag
| ||||||||||||||||||||||| |||||| ||||| |||| ||||| |||||||| |||||||| ||||| ||||| |||||||| |||||||| ||||| || | || |    ||| ||||     ||  |  |||| |   |   || ||    ||   |  | ||  |   || |||||
ATGCCAAGTTCTGGAATGAGTTTGGAAAATCAGTCAAGTTGGGCATCATTGAAGACGCAACTAACAGGAACCGTCTTGCAAAGCTTCTGAGATTTGAAAGgtttgtct-tctattctaat-gtccactaattgctgtagttatatatgcgaggga-taatagaactgagtttttatctgtttcag

upper sequence: GRMZM2G141931_T02 (Zea mays), 5'ss of exon 12
lower sequence: GLYMA17G37820.1 (Glycine max), 5'ss of exon 12
-ACGCCAAGTTCTGGAATGAGTTTGGCAAATCAATCAAGCTGGGTATCATCGAAGACGCGACTAACAGAAACCGCCTTGCGAAGCTTCTTAGATTTGAGAGgttggtttgtccagcag--aattgtcctactcttctttaagttttgggtaaaagagaactgtacctcatattt--gctgcttgcttcag--------
 |  |||||||||||||||||||||| ||||| || || || ||||||||||| || || || |||||||| ||  | || || || || |||||||||||||   ||  | |  ||   |||| |   |||||| |   ||| ||   |         |  ||  | | | ||  |||| |   |  |         
TATTCCAAGTTCTGGAATGAGTTTGGTAAATCCATTAAACTTGGTATCATCGAGGATGCCACCAACAGAAATCGTTTGGCAAAACTGCTCAGATTTGAGAggtatattacttcttcatgtaattattaaactcttgtggtagtgttatttcctcacttccattagttaacaatttagctgatacttggaactcttgca

upper sequence: GRMZM2G141931_T02 (Zea mays), 5'ss of exon 12
lower sequence: GLYMA14G40320.1 (Glycine max), 5'ss of exon 12
ACGCCAAGTTCTGGAATGAGTTTGGCAAATCAATCAAGCTGGGTATCATCGAAGACGCGACTAACAGAAACCGCCTTGCGAAGCTTCTTAGATTTGAGAGgttggtttgtccagcag--aattgtcctactcttctttaagttttgggtaaaagagaactgtacctcatattt--gctgcttgcttcag---------
|  | |||||||||||||||||||| ||||| || || || ||||||||||| || || || |||||||| ||  | || || || || |||||||||||||   ||  | | |||   |||| |   ||||||     ||| ||   |         |  ||  | | ||||  |||| |   |  |          
ATTCTAAGTTCTGGAATGAGTTTGGTAAATCCATTAAACTTGGTATCATCGAGGATGCCACCAACAGAAATCGTTTGGCAAAACTGCTCAGATTTGAGAGgtatattacttctgcatgtaattattaaactcttggggtagtgttatttcctcacttccattatttaacattttggctgatacttgtaactcttgcag

upper sequence: GRMZM2G141931_T02 (Zea mays), 5'ss of exon 12
lower sequence: Vv18s0001g14500.t01 (Vitis vinifera), 5'ss of exon 12
ACGCCAAGTTCTGGAATGAGTTTGGCAAATCAATCAAGCTGGGTATCATCGAAGACGCGACTAACAGAAACCGCCTTGCGAAGCTTCTTAGATTTGAGAGgttggtttgtccagcagaattgtcctactcttctttaagttttgggtaa------aagagaactgtacctcatatttgctgcttgcttcag---------------------
| || ||||||||||||||||||||||| || || || || ||||| || ||||| ||  | |||||||||||| | || |||||||| |||||||| ||||   ||| |       | |   | || |||  ||||  |||   |          |   |  || | |||        |||||  ||  |                     
ATGCAAAGTTCTGGAATGAGTTTGGCAAGTCCATAAAACTTGGTATTATTGAAGATGCATCCAACAGAAACCGCTTGGCCAAGCTTCTCAGATTTGAAAGgtactttttttttttgcattcagcatattctgttttagttttctagctgttctttgattcacttgcatctccctgaacgtgctttatttggtattttgctctatttttacag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|60348795|gb|DN215768.1|DN215768
EST:     GAAGACGCGACTAACAGAAACCGCCTTGCGAAGCTTCTTAGATTTGAGAG                         TACCAAGTCGGATGGCAAACTTGCCTCCCTTGACGAGTACATCTCACGGAT
genomic: GAAGACGCGACTAACAGAAACCGCCTTGCGAAGCTTCTTAGATTTGAGAGgttggtttgt ... cttgcttcagTACCAAGTCGGATGGCAAACTTGCCTCCCTTGACGAGTACATCTCACGGAT
EST: gi|7216906|gb|AW563028.1|AW563028
EST:     GAAGACGCGACTAACAGAAACCGCCTTGCGAAGCTTCTTAGATTTGAGAG                         TACCAAGTCGGATGGCAAACTTGCCTCCCTTGACGAGTACATCTCACGGAT
genomic: GAAGACGCGACTAACAGAAACCGCCTTGCGAAGCTTCTTAGATTTGAGAGgttggtttgt ... cttgcttcagTACCAAGTCGGATGGCAAACTTGCCTCCCTTGACGAGTACATCTCACGGAT
EST: gi|211354989|gb|FL245114.1|FL245114
EST:     GAAGACGCGACTAACAGAAACCGCCTTGCGAAGCTTCTTAGATTTGAGAG                         TACCAAGTCGGATGGCAAACTTGCCTCCCTTGACGAGTACATCTCACGGAT
genomic: GAAGACGCGACTAACAGAAACCGCCTTGCGAAGCTTCTTAGATTTGAGAGgttggtttgt ... cttgcttcagTACCAAGTCGGATGGCAAACTTGCCTCCCTTGACGAGTACATCTCACGGAT
EST: gi|211114829|gb|FL096555.1|FL096555
EST:     GAAGACGCGACTAACAGAAACCGCCTTGCGAAGCTTCTTAGATTTGAGAG                         TACCAAGTCGGATGGCAAACTTGCCTCCCTTTACGAGTACATCTCACGGAT
genomic: GAAGACGCGACTAACAGAAACCGCCTTGCGAAGCTTCTTAGATTTGAGAGgttggtttgt ... cttgcttcagTACCAAGTCGGATGGCAAACTTGCCTCCCTTGACGAGTACATCTCACGGAT
EST: gi|14883462|gb|BI273359.1|BI273359
EST:     CTTGCGAAGCTTCTTAGATTTGAGAG                         TACCAAGTCGGATGGCAAACTTGCCTCCCTTGACGAGTACATCTCACGGAT
genomic: CTTGCGAAGCTTCTTAGATTTGAGAGgttggtttgt ... cttgcttcagTACCAAGTCGGATGGCAAACTTGCCTCCCTTGACGAGTACATCTCACGGAT
EST: gi|67040044|gb|CO466299.1|CO466299
EST:     GAAGACGTTACTAACAGAAACCGCCTTGCGAAGCTTCTTAGATTTGAGAG                         TACCAAGTCGGATGTGCAACACTTGCCTCCCTTGACGAGTACATCTCACGG
genomic: GAAGACGCGACTAACAGAAACCGCCTTGCGAAGCTTCTTAGATTTGAGAGgttggtttgt ... cttgcttcagTACCAAGTCGGATG-GCAA-ACTTGCCTCCCTTGACGAGTACATCTCACGG
EST: gi|30306589|gb|CD001262.1|CD001262
EST:     GAAGACGCGACTAACAGAAACCGCCTTGCGAAGCTTCTTAGATTTGAGAG                         TACCAAGTCGGATGGCAAACTTGCCTCCCTTGACGAGTACATCTCACGGAT
genomic: GAAGACGCGACTAACAGAAACCGCCTTGCGAAGCTTCTTAGATTTGAGAGgttggtttgt ... cttgcttcagTACCAAGTCGGATGGCAAACTTGCCTCCCTTGACGAGTACATCTCACGGAT
EST: gi|31354312|gb|CD438669.1|CD438669
EST:     GAAGACGCGACTAACAGAAACCGCCTTGCGAAGCTTCTTAGATTTGAGAG                         TACCAAGTCGGATGGCAAACTTGCCTCCCTTGACGAGTACATCTCACGGAT
genomic: GAAGACGCGACTAACAGAAACCGCCTTGCGAAGCTTCTTAGATTTGAGAGgttggtttgt ... cttgcttcagTACCAAGTCGGATGGCAAACTTGCCTCCCTTGACGAGTACATCTCACGGAT
EST: gi|67017884|gb|CO446633.1|CO446633
EST:     GAAGACGCGACTAACAGAAACCGCCTTGCGAAGCTTCTTAGATTTGAGAG                         TACCAAGTCGGATGGCAAACTTGCCTCCCTTGACGAGTACATCTCACGGAT
genomic: GAAGACGCGACTAACAGAAACCGCCTTGCGAAGCTTCTTAGATTTGAGAGgttggtttgt ... cttgcttcagTACCAAGTCGGATGGCAAACTTGCCTCCCTTGACGAGTACATCTCACGGAT
EST: gi|50339539|gb|CO534665.1|CO534665
EST:     GAAGACGCGACTAACAGAAACCGCCTTGCGAAGCTTCTTAGATTTGAGAG                         TACCAAGTCGGATGGCAAACTTGCCTCCCTTGACGAGTACATCTCACGGAT
genomic: GAAGACGCGACTAACAGAAACCGCCTTGCGAAGCTTCTTAGATTTGAGAGgttggtttgt ... cttgcttcagTACCAAGTCGGATGGCAAACTTGCCTCCCTTGACGAGTACATCTCACGGAT
EST: gi|60344141|gb|DN211114.1|DN211114
EST:     GAAGACGCGACTAACAGAAACCGCCTTGCGAAGCTTCTTAGATTTGAGAG                         TACCAAGTCGGATGGCAAACTTGCCTCCCTTGACGAGTACATCTCACGGAT
genomic: GAAGACGCGACTAACAGAAACCGCCTTGCGAAGCTTCTTAGATTTGAGAGgttggtttgt ... cttgcttcagTACCAAGTCGGATGGCAAACTTGCCTCCCTTGACGAGTACATCTCACGGAT
EST: gi|31356123|gb|CD440480.1|CD440480
EST:     GAAGACGCGACTAACAGAAACCGCCTTGCGAAGCTTCTTAGATTTGAGAG                         TACCAAGTCGGATGGCAAACTTGCCTCCCTTGACGAGTACATCTCACGGAT
genomic: GAAGACGCGACTAACAGAAACCGCCTTGCGAAGCTTCTTAGATTTGAGAGgttggtttgt ... cttgcttcagTACCAAGTCGGATGGCAAACTTGCCTCCCTTGACGAGTACATCTCACGGAT
EST: gi|61118208|gb|DN559169.1|DN559169
EST:     GAAGACGCGACTAACAGAAACCGCCTTGCGAAGCTTCTTAGATTTGAGAG                         TACCAAGTCGGATGGCAAACTTGCCTCCCTTGACGAGTACATCTCACGGAT
genomic: GAAGACGCGACTAACAGAAACCGCCTTGCGAAGCTTCTTAGATTTGAGAGgttggtttgt ... cttgcttcagTACCAAGTCGGATGGCAAACTTGCCTCCCTTGACGAGTACATCTCACGGAT
EST: gi|20208078|gb|BQ134167.1|BQ134167
EST:     GAAGACGCGACTAACAGAAACCGCCTTGCGAAGCTTCTTAGATTTGAGAG                         TACCAAGTCGGATGGCAAACTTGCCTCCCTTGACGAGTACATCTCACGGAT
genomic: GAAGACGCGACTAACAGAAACCGCCTTGCGAAGCTTCTTAGATTTGAGAGgttggtttgt ... cttgcttcagTACCAAGTCGGATGGCAAACTTGCCTCCCTTGACGAGTACATCTCACGGAT
EST: gi|26456287|gb|CA827870.1|CA827870
EST:     GAAGACGCGACTAACAGAAACCGCCTTGCGAAGCTTCTTAGATTTGAGAG                         TACCAAGTCGGATGGCAAACTTGCCTCCCTTGACGAGTACATCTCACGGAT
genomic: GAAGACGCGACTAACAGAAACCGCCTTGCGAAGCTTCTTAGATTTGAGAGgttggtttgt ... cttgcttcagTACCAAGTCGGATGGCAAACTTGCCTCCCTTGACGAGTACATCTCACGGAT
EST: gi|67024193|gb|CO452942.1|CO452942
EST:     GAAGACGCGACTAACAGAAACCGCCTTGCGAAGCTTCTTAGATTTGAGAG                         TACCAAGTCGGATGGCAAACTTGCCTCCCTTGACGAGTACATCTCACGGAT
genomic: GAAGACGCGACTAACAGAAACCGCCTTGCGAAGCTTCTTAGATTTGAGAGgttggtttgt ... cttgcttcagTACCAAGTCGGATGGCAAACTTGCCTCCCTTGACGAGTACATCTCACGGAT
EST: gi|7227450|gb|AW566091.1|AW566091
EST:     GAAGACGCGACTAACAGAAACCGCCTTGCGAAGCTTCTTAGATTTGAGAG                         TACCAAGTCGGATGGCAAACTTGCCTCCCTTGACGAGTACATCTCACGGAT
genomic: GAAGACGCGACTAACAGAAACCGCCTTGCGAAGCTTCTTAGATTTGAGAGgttggtttgt ... cttgcttcagTACCAAGTCGGATGGCAAACTTGCCTCCCTTGACGAGTACATCTCACGGAT
EST: gi|67040100|gb|CO466355.1|CO466355
EST:     GAAGACGCGACTAACAGAAACCGCCTTGCGAAGCTTCTTAGATTTGAGAG                         TACCAAGTCGGATGGCAAACTTGCCCTCCCT-GACGAGTACATCTCACGGA
genomic: GAAGACGCGACTAACAGAAACCGCCTTGCGAAGCTTCTTAGATTTGAGAGgttggtttgt ... cttgcttcagTACCAAGTCGGATGGCAAACTTGCC-TCCCTTGACGAGTACATCTCACGGA