Sequence
atgc intronic sequence ATGC exonic sequenceATCATTTGGGTCTGCACTTGAATTTGTTTGGTCAACTGATGGAGAATATGCCATCAGAGAAAGCACCTCGAGGATAAAGATATACAGTAAAAATTTCCAGgtttgcctcgatataacatatttcacttcttcctggagcataatctgttaactggagctgatcttttcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G141587_T05 (Zea mays), 5'ss of exon 12
lower sequence: LOC_Os02g11840.1 (Oryza sativa), 5'ss of exon 3
ATCATTTGGGTCTGCACTTGAATTTGTTTGGTCAACTGATGGAGAATATGCCATCAGAGAAAGCACCTCGAGGATAAAGATATACAGTAAAAATTTCCAGgtttgc---ctcgatataacatatttcactt--cttcctggagcataatctgttaactggagctgatcttttcag-------------------------
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ATCATTCGGGTCTGCACTTGAATTTGTTTGGTCAGTTGATGGAGAATATGCTGTCAGAGAAAGCACGTCGAGGATAAAGATATACAGTAAAAATTTCCAGgtttgtactaccactgtcccttcttttaattatctttgtacatcagagtaggggtccttcaatgcaatgtgtgggctagaaaaatttattgggtgtgcac
upper sequence: GRMZM2G141587_T05 (Zea mays), 5'ss of exon 12
lower sequence: LOC_Os02g11830.2 (Oryza sativa), 5'ss of exon 12
ATCATTTGGGTCTGCACTTGAATTTGTTTGGTCAACTGATGGAGAATATGCCATCAGAGAAAGCACCTCGAGGATAAAGATATACAGTAAAAATTTCCAGgtttgc----ctcgatataacatatttcacttcttcctg-------gagcataatctgttaactggagctgatcttttcag-------------------
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ATCATTCGGGTCTGCACTTGAATTTGTTTGGTCACTTGATGGAGAATACGCTGTCAGAGAAAGCACCTCGAGGATAAAGATATACAGTAAAAATTTCCAGgtttgtactgcccactgccccttcttttaattatcgttgtacatcagagtaggggtccttcaatgcaatgtgtggggctagaaaaatttagtaggtgtgc
upper sequence: GRMZM2G141587_T05 (Zea mays), 5'ss of exon 12
lower sequence: GLYMA15G01680.1 (Glycine max), 5'ss of exon 12
ATCATTTGGGTCTGCACTTGAATTTGTTTGGTCAACTGATGGAGAATATGCCATCAGAGAAAGCACCTCGAGGATAAAGATATACAGTAAAAATTTCCAGgtttgcctcgatataacatatttcacttcttcctgga---gcataatct-gttaactg-gagctgatcttttcag-------------------------
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GTCATTTGGTTCAGCACTGGAATTTGTTTGGTCTTCTGAGGGAGAATATGCTGTCAGAGAAAGTACATCAAAGATTAAAATTTTCAGCAAAAATTTCCAGgtttgtacttttttaaaaactttgtttcctctctaatctcgtgcaatcttgttctgtgtgtaatgaaccaacaagttcttgctatttcttaaaaggaaaa
upper sequence: GRMZM2G141587_T05 (Zea mays), 5'ss of exon 12
lower sequence: GLYMA13G43680.2 (Glycine max), 5'ss of exon 12
ATCATTTGGGTCTGCACTTGAATTTGTTTGGTCAACTGATGGAGAATATGCCATCAGAGAAAGCACCTCGAGGATAAAGATATACAGTAAAAATTTCCAGgtttgcctcgatataacatatttcacttcttcctgga----gcataatct-gttaactg-gagctgatcttttcag-------------------------
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GTCATTTGGTTCAGCACTGGAATTTGTTTGGTCTTCTGAGGGAGAATATGCTGTCAGAGAAAGTACATCAAAGATTAAAATTTTCAGCAAAAATTTCCAGgtttgta-cttttttttaaacttcatttcctctctaatcttgtgtgatcttgttctttgtgtaatgaaccaacaagttcttgctatttcttaaaaggaaaa
upper sequence: GRMZM2G141587_T05 (Zea mays), 5'ss of exon 12
lower sequence: AT1G79990.1 (Arabidopsis thaliana), 5'ss of exon 16
ATCATTTGGGTCTGCACTTGAATTTGTTTGGTCAACTGATGGAGAATATGCCATCAGAGAAAGCACCTCGAGGATAAAGATATACAGTAAAAATTTCCAGgtttgc--ctcgatataacatatttcacttcttcctgg---agcataa----tctgttaactggagctgatcttttcag--------------------------------------------
|||||||| ||||| || ||||||||||||||| ||||||| || |||| |||| |||||| | | | ||| ||||| | ||| || |||||||||||||| || | | || || | ||| ||| | ||| | |||| || || || | | |
GTCATTTGGCTCTGCGCTAGAATTTGTTTGGTCATCTGATGGGGAGCATGCTGTCAGGGAAAGCTCGACAAAGATCAAGATCTTCAGCAAGAATTTCCAGgtttgtaattccttttggcacgttccttttccgactgattaactctaaagcttttgttttttgtgtcttattctgttatctgaaatacactaacctatgctgatacccttgtttaatttgcag
upper sequence: GRMZM2G141587_T05 (Zea mays), 5'ss of exon 12
lower sequence: AT3G15980.2 (Arabidopsis thaliana), 5'ss of exon 12
ATCATTTGGGTCTGCACTTGAATTTGTTTGGTCAACTGATGGAGAATATGCCATCAGAGAAAGCACCTCGAGGATAAAGATATACAGTAAAAATTTCCAGgtttgc----ctcgatataacatatttcact---tcttcctggagcataatctgttaactggag------ctgatcttttcag---------------------------------------------------
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ATCTTTTGGGTCTGGCCTGGAATTTGTTTGGTCATCTGAGGGGGAATGTGCGGTTAGAGAAAGCTCATCAAAGATAAAGATATTCAGTAAAAATTTCCAGgtttgctattctcattatggccttactcatactattttgttggagtatgattctagggttgaagaaattgcagatgcttgcaatagagacagctattactggcttattatattaataaaaggtggtgttttcag
upper sequence: GRMZM2G141587_T05 (Zea mays), 5'ss of exon 12
lower sequence: Vv09s0002g04810.t01 (Vitis vinifera), 5'ss of exon 12
ATCATTTGGGTCTGCACTTGAATTTGTTTGGTCAACTGATGGAGAATATGCCATCAGAGAAAGCACCTCGAGGATAAAGATATACAGTAAAAATTTCCAGgtttgcctcgatataacatatttcacttcttcctggagcataatctgttaactggagctgatcttttcag-------------------------------------
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GTCTTTTGGTTCGGCATTGGAATTTGTATGGTCATCAGATGGTGAATATGCTGTCAGAGAAAGTACATCAAAGGTTAAGATTTTCAGTAAGAATTTCCAGgtttgtgtcc------cctcctttgtttctctctgatg-agaatagattaggtgcaatatatatatatatatgcatgtgtgtgtgtgtgtgtgctgctgaaaacattMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|32928123|gb|CF032935.1|CF032935EST: CCATCAGAGAAAGCACCTCGAGGATAAAGATATACAGTAAAAATTTCCAG GAGAAGAAAAGTATAAGGCCATCCTTTTCCGCTGAACGGATATTTGGTGGA
genomic: CCATCAGAGAAAGCACCTCGAGGATAAAGATATACAGTAAAAATTTCCAGgtttgcctcg ... atcttttcagGAGAAGAAAAGTATAAGGCCATCCTTTTCCGCTGAACGGATATTTGGTGGA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATCATTTGGGTCTGCACTTGAATTTGTTTGGTCAACTGATGGAGAATATGCCATCAGAGAAAGCACCTCGAGGATAAAGATATACAGTAAAAATTTCCAGgtttgcctcgatataacatatttcacttcttcctggagcataatctgttaactggagctgatcttttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT