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CTATGGAGCAACAGAGTATCAGTATATCAAAAGCAGGAATCGTCACATCTCTTCAAGCTAGATGCAGTGTTATTGCTGCGGCAAACCCAGTAGGGGGAAGgtaacttcagttccatgcatgccatgtagtaccagtgcatggtgttaagaaagatactgaatgcaatcgtccttgatctcacag
species | Zea mays |
transcript | GRMZM2G139894_T02 |
intron # | 12 |
splice site | 5' |
intron type | U2 |
EST: CTTCAAGCTAGATGCAGTGTTATTGCTGCGGCAAACCCAGTAGGGGGAAG GTATGATTCATCAAAGACATTCACTCAGAACGTCGAATTGACGGATCCCATEST: gi|211351173|gb|FL066633.1|FL066633
genomic: CTTCAAGCTAGATGCAGTGTTATTGCTGCGGCAAACCCAGTAGGGGGAAGgtaacttcag ... gatctcacagGTATGATTCATCAAAGACATTCACTCAGAATGTCGAATTGACGGATCCCAT
EST: CTTCAAGCTAGATGCAGTGTTATTGCTGCGGCNAACCCAGTAGGGGGAAG GTATGATTCATCAAAGACATTCEST: gi|211174125|gb|FL130962.1|FL130962
genomic: CTTCAAGCTAGATGCAGTGTTATTGCTGCGGCAAACCCAGTAGGGGGAAGgtaacttcag ... gatctcacagGTATGATTCATCAAAGACATTC
EST: CTTCAAGCTAGATGCAGTGTTATTGCTGCGGCAAACCCAGTAGGGGGAAG GTATGATTCATCAAAGACATTCACTCAGAATGTCGAATTGACGGATCCCATEST: gi|32932509|gb|CF037321.1|CF037321
genomic: CTTCAAGCTAGATGCAGTGTTATTGCTGCGGCAAACCCAGTAGGGGGAAGgtaacttcag ... gatctcacagGTATGATTCATCAAAGACATTCACTCAGAATGTCGAATTGACGGATCCCAT
EST: CTTCAAGCTAGATGCAGTGTTATTGCTGCGGCAAACCCAGTAGGGGGAAG GTATGATTCATCAAAGACATTCACTCAGAACGTCGAATTGACGGATCCCATEST: gi|211172448|gb|FL130949.1|FL130949
genomic: CTTCAAGCTAGATGCAGTGTTATTGCTGCGGCAAACCCAGTAGGGGGAAGgtaacttcag ... gatctcacagGTATGATTCATCAAAGACATTCACTCAGAATGTCGAATTGACGGATCCCAT
EST: CTTCAAGCTAGATGCAGTGTTATTGCTGCGGCAAACCCAGTAGGGGGAAG GTATGATTCATCAAAGACATTCACTCAGAATGTCGAATTGACGGATCCCATEST: gi|33093214|gb|CF053208.1|CF053208
genomic: CTTCAAGCTAGATGCAGTGTTATTGCTGCGGCAAACCCAGTAGGGGGAAGgtaacttcag ... gatctcacagGTATGATTCATCAAAGACATTCACTCAGAATGTCGAATTGACGGATCCCAT
EST: CTTCAAGCTAGATGCAGTGTTATTGCTGCGGCAAACCCAGTAGGGGGAAG GTATGATTCATCAAAGACATTCACTCAGAACGTCGAATTGACGGATCCCATEST: gi|211174123|gb|FL130960.1|FL130960
genomic: CTTCAAGCTAGATGCAGTGTTATTGCTGCGGCAAACCCAGTAGGGGGAAGgtaacttcag ... gatctcacagGTATGATTCATCAAAGACATTCACTCAGAATGTCGAATTGACGGATCCCAT
EST: CTTCAAGCTAGATGCAGTGTTATTGCTGCGGCAAACCCAGTAGGGGGAAG GTATGATTCATCEST: gi|211174124|gb|FL130961.1|FL130961
genomic: CTTCAAGCTAGATGCAGTGTTATTGCTGCGGCAAACCCAGTAGGGGGAAGgtaacttcag ... gatctcacagGTATGATTCATC
EST: CTTCAAGCTAGATGCAGTGTTATTGCTGCGGCAAACCCAGTAGGGGGAAG GTATGATTCATCAAAGACATTCACTCAGAATGTCGAATTGACGGATCCCATEST: gi|211172450|gb|FL130951.1|FL130951
genomic: CTTCAAGCTAGATGCAGTGTTATTGCTGCGGCAAACCCAGTAGGGGGAAGgtaacttcag ... gatctcacagGTATGATTCATCAAAGACATTCACTCAGAATGTCGAATTGACGGATCCCAT
EST: CTTCAAGCTAGATGCAGTGTTATTGCTGCGGCAAACCCAGTAGGGGGAAG GTATGATTCATCAAAGACATTCACTCAGAATGTCGAATTGACGGATCCCATEST: gi|32943927|gb|CF048746.1|CF048746
genomic: CTTCAAGCTAGATGCAGTGTTATTGCTGCGGCAAACCCAGTAGGGGGAAGgtaacttcag ... gatctcacagGTATGATTCATCAAAGACATTCACTCAGAATGTCGAATTGACGGATCCCAT
EST: CTTCAAGCTAGATGCAGTGTTATTGCTGCGGCAAACCCAGTAGGGGGAAG GTATGATTCATCAAAGACATTCACTCAGAACGTCGAATTGACGGATCCCATEST: gi|211174121|gb|FL130958.1|FL130958
genomic: CTTCAAGCTAGATGCAGTGTTATTGCTGCGGCAAACCCAGTAGGGGGAAGgtaacttcag ... gatctcacagGTATGATTCATCAAAGACATTCACTCAGAATGTCGAATTGACGGATCCCAT
EST: CTTCAAGCTAGATGCAGTGTTATTGCTGCGGCAAACCCAGTAGGGGGAAG GTATGATTCATCAAAGACATTCACTCAGAACGTCGAATTGACGGATCCCATEST: gi|211174118|gb|FL130955.1|FL130955
genomic: CTTCAAGCTAGATGCAGTGTTATTGCTGCGGCAAACCCAGTAGGGGGAAGgtaacttcag ... gatctcacagGTATGATTCATCAAAGACATTCACTCAGAATGTCGAATTGACGGATCCCAT
EST: CTTCAAGCTAGATGCAGTGTTATTGCTGCGGCAAACCCAGTAGGGGGAAG GTATGATTCATCAAAGACATTCACTCAGAACGTCGAATTGACGGATCCCATEST: gi|30306555|gb|CD001228.1|CD001228
genomic: CTTCAAGCTAGATGCAGTGTTATTGCTGCGGCAAACCCAGTAGGGGGAAGgtaacttcag ... gatctcacagGTATGATTCATCAAAGACATTCACTCAGAATGTCGAATTGACGGATCCCAT
EST: CTTCAAGCTAGATGCAGTGTTATTGCTGCGGCAAACCCAGTAGGGGGAAG GTATGATTCATCAAAGACATTCACTCAGAATGTCGAATTGACGGATCCCATEST: gi|211174117|gb|FL130954.1|FL130954
genomic: CTTCAAGCTAGATGCAGTGTTATTGCTGCGGCAAACCCAGTAGGGGGAAGgtaacttcag ... gatctcacagGTATGATTCATCAAAGACATTCACTCAGAATGTCGAATTGACGGATCCCAT
EST: CTTCAAGCTAGATGCAGTGTTATTGCTGCGGCAAACCCAGTAGGGGGAAG GTATGATTCATCAAAGACATTCACTCAGAACGTCGAATTGACGGATCCCATEST: gi|29544563|gb|CB604943.1|CB604943
genomic: CTTCAAGCTAGATGCAGTGTTATTGCTGCGGCAAACCCAGTAGGGGGAAGgtaacttcag ... gatctcacagGTATGATTCATCAAAGACATTCACTCAGAATGTCGAATTGACGGATCCCAT
EST: CTTCAAGCTAGATGCAGTGTTATTGCTGCGGCAAACCCAGTAGGGGGAAG GTATGATTCATCAAAGACATTCACTCAGAATGTCGAATTGACGGATCCCATEST: gi|211174122|gb|FL130959.1|FL130959
genomic: CTTCAAGCTAGATGCAGTGTTATTGCTGCGGCAAACCCAGTAGGGGGAAGgtaacttcag ... gatctcacagGTATGATTCATCAAAGACATTCACTCAGAATGTCGAATTGACGGATCCCAT
EST: CTTCAAGCTAGATGCAGTGTTATTGCTGCGGCAAACCCAGTAGGGGGAAG GTATGATTCATCAAAGACAT--ACTCAGAATGTCGAATTGACGGATCCCATEST: gi|211172447|gb|FL130948.1|FL130948
genomic: CTTCAAGCTAGATGCAGTGTTATTGCTGCGGCAAACCCAGTAGGGGGAAGgtaacttcag ... gatctcacagGTATGATTCATCAAAGACATTCACTCAGAATGTCGAATTGACGGATCCCAT
EST: CTTCAAGCTAGATGCAGTGTTATTGCTGCGGCAAACCCAGTAGGGGGAAG GTATGATTCATCAAAGACATTCACTCAGAACGTCGAATTGACGGATCCCATEST: gi|18450515|gb|BM428793.1|BM428793
genomic: CTTCAAGCTAGATGCAGTGTTATTGCTGCGGCAAACCCAGTAGGGGGAAGgtaacttcag ... gatctcacagGTATGATTCATCAAAGACATTCACTCAGAATGTCGAATTGACGGATCCCAT
EST: GTTA-TGCTGCGGCAAACCCAGTAGGGGGAAG GTATGATTCATCAAAGACATTCACTCAGAACGTCGAA-TGACGGATCCCATEST: gi|29544433|gb|CB604813.1|CB604813
genomic: GTTATTGCTGCGGCAAACCCAGTAGGGGGAAGgtaacttcag ... gatctcacagGTATGATTCATCAAAGACATTCACTCAGAATGTCGAATTGACGGATCCCAT
EST: CTTCAAGCTAGATGCAGTGTTATTGCTGCGGCAAACCCAGTAGGGGGAAG GTATGATTCATCAAAGACATTCACTCAGAATGTCGAATTGACGEST: gi|211174120|gb|FL130957.1|FL130957
genomic: CTTCAAGCTAGATGCAGTGTTATTGCTGCGGCAAACCCAGTAGGGGGAAGgtaacttcag ... gatctcacagGTATGATTCATCAAAGACATTCACTCAGAATGTCGAATTGACG
EST: CTTCAAGCTAGATGCAGTGTTATTGCTGCGGCAAACCCAGTAGGGGGAAG GTATGATTCATCAAAGACATTCACTCAGAACGTCGAATTGACGGATCCCATEST: gi|211172449|gb|FL130950.1|FL130950
genomic: CTTCAAGCTAGATGCAGTGTTATTGCTGCGGCAAACCCAGTAGGGGGAAGgtaacttcag ... gatctcacagGTATGATTCATCAAAGACATTCACTCAGAATGTCGAATTGACGGATCCCAT
EST: CTTCAAGCTAGATGCAGTGTTATTGCTGCGGCAAACCCAGTAGGGGGAAG GTATGATTCATCAAAGACATTCACTCAGAACGTCGAATTGACGGATCCCAT
genomic: CTTCAAGCTAGATGCAGTGTTATTGCTGCGGCAAACCCAGTAGGGGGAAGgtaacttcag ... gatctcacagGTATGATTCATCAAAGACATTCACTCAGAATGTCGAATTGACGGATCCCAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTATGGAGCAACAGAGTATCAGTATATCAAAAGCAGGAATCGTCACATCTCTTCAAGCTAGATGCAGTGTTATTGCTGCGGCAAACCCAGTAGGGGGAAGgtaacttcagttccatgcatgccatgtagtaccagtgcatggtgttaagaaagatactgaatgcaatcgtccttgatctcacag
- - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC