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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAGCTATAATATTAGAGGGCTATGCGTTTTTGCGCATTGATGGCACCACCAAGGTTTCTGACCGGGAAAGGATTGTGAAGgttcttttcgccttccctttattcaacctatgtcatagagctctctatcttttttgttgcttacacacacttgaatccttcag

Basic information

species Zea mays
transcript GRMZM2G138125_T02
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G138125_T02 (Zea mays), 5'ss of exon 12
lower sequence: LOC_Os04g59624.3 (Oryza sativa), 5'ss of exon 11
GAAGCTATAATATTAGAGGGCTATGCGTTTTTGCGCATTGATGGCACCACCAAGGTTTCTGACCGGGAAAGGATTGTGAAGgttcttttc--gccttccctttattcaacctatgtcatag--agctctctatcttttttgttgcttacacacacttgaatcct--tcag
|| |||||||||||||| ||||||  |||||||||||||||||| ||||||||| |||||||  ||||||||||||||||||||||| ||   | ||||||||  |     |||| ||| |  |    | |  ||  | | |||||||||   | |  | |  |  ||||
GAGGCTATAATATTAGAAGGCTATAAGTTTTTGCGCATTGATGGTACCACCAAGATTTCTGAGAGGGAAAGGATTGTGAAGgttcttctctgtctttccctttccttcttttatgccatgggcaaaattgttactgctatattgcttacatggaatgcatttgtgatcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|28873896|gb|CB329825.1|CB329825
EST:     TGCGCATTGATGGCACCACCAAGGTTTCTGACCGGGAAAGGATTGTGAAG                         GACTTCCAAGAGGGTTGTGGAGCTCCAGTTTTTCTGCTAACCACACAAGTT
genomic: TGCGCATTGATGGCACCACCAAGGTTTCTGACCGGGAAAGGATTGTGAAGgttcttttcg ... aatccttcagGACTTCCAAGAGGGTTGTGGAGCTCCAGTTTTTCTGCTAACCACACAAGTT
EST: gi|67035224|gb|CO463757.1|CO463757
EST:     CGCATTGATGGCACCACCAAGGTTTNCTGACCGGGAAAGGATTGTGAANG                         GACTTCCNAGAGG-TTGTGGAGCTCCAGTTTTTCTGCTAACCACACAAGT
genomic: CGCATTGATGGCACCACCAAGGTTT-CTGACCGGGAAAGGATTGTGAA-Ggttcttttcg ... aatccttcagGACTTCCAAGAGGGTTGTGGAGCTCCAGTTTTTCTGCTAACCACACAAGT
EST: gi|28987103|gb|CB351465.1|CB351465
EST:     TGCGCATTGATGGCACCACCAAGGTTTCTGACCGGGAAAGGATTGTGAAG                         GACTTCCAAGAGGGTTGTGGAGCTCCAGTTTTTCTGCTAACCACACAAGTT
genomic: TGCGCATTGATGGCACCACCAAGGTTTCTGACCGGGAAAGGATTGTGAAGgttcttttcg ... aatccttcagGACTTCCAAGAGGGTTGTGGAGCTCCAGTTTTTCTGCTAACCACACAAGTT
EST: gi|94475969|gb|EB704927.1|EB704927
EST:     TGCGCATTGATGGCACCACCAAGGTTTCTGACCGGGAAAGGATTGTGAAG                         GACTTCCAAGAGGGTTGTGGAGCTCCAGTTTTTCTGCTAACCACACAAGTT
genomic: TGCGCATTGATGGCACCACCAAGGTTTCTGACCGGGAAAGGATTGTGAAGgttcttttcg ... aatccttcagGACTTCCAAGAGGGTTGTGGAGCTCCAGTTTTTCTGCTAACCACACAAGTT
EST: gi|31909131|gb|CD650765.1|CD650765
EST:     TGCGCATTGATGGCACCACCAAGGTTTCTGACCGGGAAAGGATTGTGAAG                         GACTTCCAAGAGGGTTGTGGAGCTCCAGTTTTTCTGCTAACCACACAAGTT
genomic: TGCGCATTGATGGCACCACCAAGGTTTCTGACCGGGAAAGGATTGTGAAGgttcttttcg ... aatccttcagGACTTCCAAGAGGGTTGTGGAGCTCCAGTTTTTCTGCTAACCACACAAGTT
EST: gi|28930971|gb|CB334332.1|CB334332
EST:     TGCGCATTGATGGCACCACCAAGGTTTCTGACCGGGAAAGGATTGTGAAG                         GACTTCCAAGAGGGTTGTGGAGCTCCAGTTTTTCTGCTAACCACACAAGTT
genomic: TGCGCATTGATGGCACCACCAAGGTTTCTGACCGGGAAAGGATTGTGAAGgttcttttcg ... aatccttcagGACTTCCAAGAGGGTTGTGGAGCTCCAGTTTTTCTGCTAACCACACAAGTT