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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATATGGCTGGATTAATAAGCAAGATAAATCGGTCTTCCATGGGTCCTTTGCCTGCCTGTTACTCAGTGTCTATgtaagtgtacttctctacatgaagtagatctcgtggaagttgaacagttgtgctttgcatgtttaaaagtgatcttggtaaccatttctatcacatggta...

Basic information

species Zea mays
transcript GRMZM2G137118_T01
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G137118_T01 (Zea mays), 5'ss of exon 12
lower sequence: LOC_Os05g36960.1 (Oryza sativa), 5'ss of exon 11
GATATGGCTGGATTAATAAGCAAGATAAATCGGTCTTCCATGGGTCCTTTGCCTGCCTGTTACTCAGTGTCTATgtaagtgtacttctctacatgaagtagatctcgtggaagttgaacagttgtgctttgcatgtttaaaagtgatcttggtaaccatttctatcaca-tggta-----------
|||||||||||||||||||| ||||||||| |||| ||||| || || |||||||||||||||||    |||||||||||| | || | | |||  |    |  |  |           | || |  ||| ||||  |||||||||| |||  |   ||||| || ||| | | |           
GATATGGCTGGATTAATAAGTAAGATAAATAGGTCCTCCATTGGCCCCTTGCCTGCCTGTTACTCTTCTTCTATgtaagtgcatttat-tgcatcgaagccacatttt-----------atttttatttttcatgcctaaaagtgatgttgtaagtaatttcaatgacaatagaagcaagtcatcg

upper sequence: GRMZM2G137118_T01 (Zea mays), 5'ss of exon 12
lower sequence: GLYMA12G09910.1 (Glycine max), 5'ss of exon 11
GATATGGCTGGATTAATAAGCAAGATAAATCGGTCTTCCATGGGTCCTTTGCCTGCCTGTTACTCAGTGTCTATgtaagt----gtacttctctacatgaagtag-atctcgtggaagttgaacagttgtgctttg--catgtttaaaa----gtgatcttggtaaccatttctatcacatggta-------------------------------------------------------
|||||||| ||| | ||||||||||||||||| || ||||| || ||||||||| | ||||| ||    ||  |||||||     ||    |||      | ||  ||  | | | |    | |  || || |     || |||||  |    | |||    |  ||   ||  ||        |                                                       
GATATGGCAGGACTGATAAGCAAGATAAATCGTTCATCCATTGGCCCTTTGCCTCCATGTTATTCCCCTTCCTTgtaagtttctatatgcttctgttaagattaatattcctttgtatactaccctttctgatgaaatcaggtttatgacagtgagatacctgctacttgtttaattgttcaacatcttttttatttcctctctgctaagtatcgaagttgttgactactataactacag

upper sequence: GRMZM2G137118_T01 (Zea mays), 5'ss of exon 12
lower sequence: Vv06s0009g00690.t01 (Vitis vinifera), 5'ss of exon 11
GATATGGCTGGATTAATAAGCAAGATAAATCGGTCTTCCATGGGTCCTTTGCCTGCCTGTTACTCAGTGTCTATgtaagtgtacttctctacatgaagtagatctcgtggaagttgaacagttgtgctttgcatgtttaaaagtgatcttggtaaccatttc-tatcacatggta
|||||||||||||||||||| || ||||| || ||||| || |||||||||||  | || || ||    ||| ||||||| | | | |  | ||  | |   |   |||   | |   ||       | || |   |   |  |  |||  | | | | |    |   | | |  
GATATGGCTGGATTAATAAGTAAAATAAACCGTTCTTCTATTGGTCCTTTGCCCTCATGCTATTCCCCTTCTTTgtaagtctccatgttaagattgaatttcttgtgtgcttgatatgcaaagagattctggaatatatcatattgtctgtgcagcaactaggcaatgcctaga-