1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
GGGTTCTCGTTCCATCCATACCTTCCATTTGCTGTAACATCATCCGGGCACAGAAGATTTGGCATGCAAGATGAGTTTGAAGACGAGTTAAACTTGGCAGgtgcatgttatattgactctcaaaattgccttgcaaatcataggtctcatgcttgaatgggagttgtgacacatttaatttcatgtgctctattag
species | Zea mays |
transcript | GRMZM2G133749_T01 |
intron # | 12 |
splice site | 5' |
intron type | U2 |
EST: CAGAAGATTTGGCATGCAAGATGAGTTTGAAGACGAGTTAAACTTGGCAG GTGATGAGAACAGCTGCTCTGTCTGGATGTTTTCTTCCTCACAAGAAGCTTEST: gi|78110506|gb|DV528916.1|DV528916
genomic: CAGAAGATTTGGCATGCAAGATGAGTTTGAAGACGAGTTAAACTTGGCAGgtgcatgtta ... gctctattagGTGATGAGAACAGCTGCTCTGTCTGGATGTTTTCTTCCTCACAAGAAGCTT
EST: CAGAAGATTTGGCATGCAAGATGAGTTTGAAGACGAGTTAAACTTGGCAG GTGATGAGAACAGCTGCTCTGTCTGGATGNNNNNNNCCTCACAAGAAGCTTEST: gi|78120249|gb|DV538633.1|DV538633
genomic: CAGAAGATTTGGCATGCAAGATGAGTTTGAAGACGAGTTAAACTTGGCAGgtgcatgtta ... gctctattagGTGATGAGAACAGCTGCTCTGTCTGGATGTTTTCTTCCTCACAAGAAGCTT
EST: CAGAAGATTTGGCATGCAAGATGAGTTTGAAGACGAGTTAAACTTGGCAG GTGATGAGAACAGCTGCTCTGTCTGGATGNNNNNNNCCTCCCAAGAAGCTTEST: gi|60355334|gb|DN222307.1|DN222307
genomic: CAGAAGATTTGGCATGCAAGATGAGTTTGAAGACGAGTTAAACTTGGCAGgtgcatgtta ... gctctattagGTGATGAGAACAGCTGCTCTGTCTGGATGTTTTCTTCCTCACAAGAAGCTT
EST: CAGAAGATTTGGCATGCAAGATGAGTTTGAAGACGAGTTAAACTTGGCAG GTGATGAGAACAGCTGCTCTGTCTGGATGTTTTCTTCCTCACAAGAAGCTTEST: gi|76287081|gb|DV026649.1|DV026649
genomic: CAGAAGATTTGGCATGCAAGATGAGTTTGAAGACGAGTTAAACTTGGCAGgtgcatgtta ... gctctattagGTGATGAGAACAGCTGCTCTGTCTGGATGTTTTCTTCCTCACAAGAAGCTT
EST: CAGAAGATTTGGCATGCAAGATGAGTTTGAAGACGAGTTAAACTTGGCAG GTGATGAGAACAGCTGCTCTGTCTGGATGTTTTCTTCCTCACAAGAAGCTTEST: gi|5932732|gb|AW057093.1|AW057093
genomic: CAGAAGATTTGGCATGCAAGATGAGTTTGAAGACGAGTTAAACTTGGCAGgtgcatgtta ... gctctattagGTGATGAGAACAGCTGCTCTGTCTGGATGTTTTCTTCCTCACAAGAAGCTT
EST: CAGAAGATTTGGCATGCAAGATGAGTTTGAAGACGAGTTAAACTTGGCAG GTGATGAGAACAGCTGCTCTGTCTGGATGTTTTCTTCCTCACAAGAAGCTTEST: gi|31664125|gb|CD573305.1|CD573305
genomic: CAGAAGATTTGGCATGCAAGATGAGTTTGAAGACGAGTTAAACTTGGCAGgtgcatgtta ... gctctattagGTGATGAGAACAGCTGCTCTGTCTGGATGTTTTCTTCCTCACAAGAAGCTT
EST: CAGAAGATTTGGCATGCAAGATGAGTTTGAAGACGAGTTAAACTTGGCAG GTGATGAGAACAGCTGCTCTGTCTGGATGTTTTCTTCCTCACAAGAAGCTTEST: gi|213186763|gb|FM190552.1|FM190552
genomic: CAGAAGATTTGGCATGCAAGATGAGTTTGAAGACGAGTTAAACTTGGCAGgtgcatgtta ... gctctattagGTGATGAGAACAGCTGCTCTGTCTGGATGTTTTCTTCCTCACAAGAAGCTT
EST: CAGAAGATTTGGCATGCAAGATGAGTTTGAAGACGAGTTAAACTTGGCAG GTGATGAGAACAGCTGCTCTGTCTGGATGTTTTCTTCCTCACAAGAAGCTTEST: gi|60349571|gb|DN216544.1|DN216544
genomic: CAGAAGATTTGGCATGCAAGATGAGTTTGAAGACGAGTTAAACTTGGCAGgtgcatgtta ... gctctattagGTGATGAGAACAGCTGCTCTGTCTGGATGTTTTCTTCCTCACAAGAAGCTT
EST: CAGAAGATTTGGCATGCAAGATGAGTTTGAAGACGAGTTAAACTTGGCAG GTGATGAGAACAGCTGCTCTGTCTGGATGTTTTCTTCCTCACAAGAAGCTTEST: gi|93283432|gb|EB675696.1|EB675696
genomic: CAGAAGATTTGGCATGCAAGATGAGTTTGAAGACGAGTTAAACTTGGCAGgtgcatgtta ... gctctattagGTGATGAGAACAGCTGCTCTGTCTGGATGTTTTCTTCCTCACAAGAAGCTT
EST: CAGAAGATTTGGCATGCAAGATGAGTTTGAAGACGAGTTAAACTTGGCAG GTGATGAGAACAGCTGCTCTGTCTGGATGNNNNNNNCCTCACAAGAAGCTT
genomic: CAGAAGATTTGGCATGCAAGATGAGTTTGAAGACGAGTTAAACTTGGCAGgtgcatgtta ... gctctattagGTGATGAGAACAGCTGCTCTGTCTGGATGTTTTCTTCCTCACAAGAAGCTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGGTTCTCGTTCCATCCATACCTTCCATTTGCTGTAACATCATCCGGGCACAGAAGATTTGGCATGCAAGATGAGTTTGAAGACGAGTTAAACTTGGCAGgtgcatgttatattgactctcaaaattgccttgcaaatcataggtctcatgcttgaatgggagttgtgacacatttaatttcatgtgctctattag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA