Sequence
atgc intronic sequence ATGC exonic sequenceTACTCCAACTGGTGTTGAAACACCTGATGTTATCGACCTTCGGAAGCTGCAGAGGAAGGAGACTGACAAGCAGGCAGAACGGCCGCTGTACCAGgtaagtagatgtttgtggtattgctggggtttgtggtatctttgttaatatccattgctcatgttccttccttggcttctgaag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G132060_T02 (Zea mays), 5'ss of exon 12
lower sequence: GLYMA13G25110.2 (Glycine max), 5'ss of exon 13
TACTCCAACTGGTGTTGAAACACCTGATGTTATCGACCTTCGGAAGCTGCAGAGGAAGGAGACTGACAAGCAGGCAGAACGGCCGCTGTACCAGgtaagtagat--gtttgtggtattgctggggtttgtggtatctttgttaatatccattgctcatgttccttccttggcttctgaag
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CACTCCCACTGGAGTGGAGACACCTGATGTTATTGACCTTCGTAAGCAGCAGAGGAAGGAACCTGAAAAGC------------CTCTTTATCAAgtgagtgtttctatttctgctcttccatcagttt----tagctctttgatcatttgtttgtcattaaccatgttt--ttcatgaag
upper sequence: GRMZM2G132060_T02 (Zea mays), 5'ss of exon 12
lower sequence: GLYMA13G31550.2 (Glycine max), 5'ss of exon 13
TACTCCAACTGGTGTTGAAACACCTGATGTTATCGACCTTCGGAAGCTGCAGAGGAAGGAGACTGACAAGCAGGCAGAACGGCCGCTGTACCAGgtaagtagatgtttgtggtattgctggggtttgtggtatctttgttaatatccattgctcat-gttccttccttggcttctgaag
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CACTCCCACTGGAGTGGAAACACCTGATGTTATTGACCTCCGGAAGCAACAGAGGAAGGAGCCTGAGAGGC---CTCTTTATCAAgtgagtctttttaattgctgttttt--catccttgacttctgatttgacttgttatgtaattactgtttgttgttttctatgtag---------
upper sequence: GRMZM2G132060_T02 (Zea mays), 5'ss of exon 12
lower sequence: GLYMA15G07760.1 (Glycine max), 5'ss of exon 13
TACTCCAACTGGTGTTGAAACACCTGATGTTATCGACCTTCGGAAGCTGCAGAGGAAGGAGACTGACAAGCAGGCAGAACGGCCGCTGTACCAGgtaagtagatgtttgtggtattgctggggtttgtggtatctttgttaatatccattgctcatgttccttccttggcttctgaag-----
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CACTCCCACTGGAGTGGAAACACCTGATGTTATCGACCTCCGGAAGCAACAGAGGAAGGAGCCTGAGA------------GGCCTCTTTATCAAgtgagtctttttttattgctttttttca-tccttgacttctgatttgacttgttatg-taattatcgtttgttgtcttctatgttgtag
upper sequence: GRMZM2G132060_T02 (Zea mays), 5'ss of exon 12
lower sequence: Vv00s0818g00010.t01 (Vitis vinifera), 5'ss of exon 5
TACTCCAACTGGTGTTGAAACACCTGATGTTATCGACCTTCGGAAGCTGCAGAGGAAGGAGACTGACAAGC---------AGGCAGAACGGCCG-CTGTACCAGgtaagt-----agatgtttgtggta--ttgctggg---gtttgtggtatctttgttaat-----atccattgctca--tgttccttccttggcttctgaag
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CACCCCAACTGGTGTTGAGACACCTGATGTTATTGACCTACGTAAGCAACAGAGGAAGGAGCCAGAGAGGCCACTTTATCAAgtgagtcaattatctgaaactggttatttttttgtctatttgtgctaaattgctaatattgttcctaatacctgtattaatgatttatttgtttctccattacctttttcttgttttcatcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|61118623|gb|DN559584.1|DN559584EST: AGCTGCAGAGGAAGGAGACTGACAAGCAGGCAGAACGGCCGCTGTACCAG GTTCTTGAACAAAAGGAAGAAAGGATCGCCCCTGGGACTCTATATGGGTCA
genomic: AGCTGCAGAGGAAGGAGACTGACAAGCAGGCAGAACGGCCGCTGTACCAGgtaagtagat ... gcttctgaagGTTCTTGAACAAAAGGAAGAAAGGATCGCCCCTGGGACTCTATATGGGTCA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TACTCCAACTGGTGTTGAAACACCTGATGTTATCGACCTTCGGAAGCTGCAGAGGAAGGAGACTGACAAGCAGGCAGAACGGCCGCTGTACCAGgtaagtagatgtttgtggtattgctggggtttgtggtatctttgttaatatccattgctcatgttccttccttggcttctgaag
- - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA