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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCTGTGCATAAATGGATTGTTCGTCATATATATTTCCCTTGCATGCGAAATGGTATATCAAAGgtaaaataatatttgtgtggatgttatgctcagggttgcttccagtgcatataagactaaactgtaccttcactacagtttgtgccttgtaaatccctta...

Basic information

species Zea mays
transcript GRMZM2G130749_T01
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G130749_T02 (Zea mays), 5'ss of exon 12
lower sequence: LOC_Os05g10810.1 (Oryza sativa), 5'ss of exon 12
CCTGTGCATAAATGGATTGTTCGTCATATATATTTCCCTTGCATGCGAAATGGTATATCAAAGgtaaaataatatttgtgtggatgttatgctcagggttgcttccagtgca--tataagactaaactgt-accttcactacagtttgtgccttgtaaatccctta
||||| ||||||||| ||||||| ||||| || || |||||||||||||||||||||||||||||||||   |  |  ||||  |||| |||| |   |||| | || || |  | |     |  |   |    |||| | ||   | |    || ||||   |  
CCTGTACATAAATGGGTTGTTCGCCATATTTACTTTCCTTGCATGCGAAATGGTATATCAAAGgtaaaac--ttctactgtgagtgttttgcttatatttgcattcaatgtacttttttttttggataattgaattcattccaccctcttaactg-aaatgtatcc
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88756047|gb|DY540188.1|DY540188
EST:     GGATTGTTCGTCATATATATTTCCCTTGCATGCGAAATGGTATATCAAAG                         GAAGTTGCTGTTTTTATATCGTTCTTTGTTTCTGCTGTACTTCATGAG
genomic: GGATTGTTCGTCATATATATTTCCCTTGCATGCGAAATGGTATATCAAAGgtaaaataat ... tttgttacagGAAGTTGCTGTTTTTATATCGTTCTTTGTTTCTGCTGTACTTCATGAG