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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATGAAGCTCTACTTACAGATTGGAAGCAGCAGTTGGATCGTGATGTTGAAACCCTTAAAGCCAAATCAAATATTGGTAGCATTCGCATGgtaagctgcagaatagaggacaacattatacttgtcccttcaaacttaatattttccattgtcaattgtgtatttttctttaaactgaagggcctgtgat...

Basic information

species Zea mays
transcript GRMZM2G126453_T01
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G126453_T02 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os11g43970.1 (Oryza sativa), 5'ss of exon 17
GATGAAGCTCTACTTACAGATTGGAAGCAGCAGTTGGATCGTGATGTTGAAACCCTTAAAGCCAAATCAAATATTGGTAGCATTCGCATGgtaagctgcagaatagaggacaacattatacttgtcccttcaaacttaatattttccattgtcaat--tgtgtatttttctttaaactgaaggg-cctgtgat
|||||| |  |||| |||||||||||||| ||  |||||||||| ||||||||||||||||| ||||| ||| ||||||||||||||| |||||||||   |  | |  ||||  | | |  |    |||   ||||    ||||  |  ||  ||  ||| ||||  |||| ||||||||    | ||||  
GATGAAACATTACTCACAGATTGGAAGCAACAACTGGATCGTGACGTTGAAACCCTTAAAGCTAAATCCAATGTTGGTAGCATTCGCACGgtaagctgtgcag-ataacacaatttcacatatcatgcttggcactttgggttttgaaccgtgtattctgtatattcctcttgaaactgaaatttcttgtg--

upper sequence: GRMZM2G126453_T02 (Zea mays), 5'ss of exon 2
lower sequence: Vv07s0005g00200.t01 (Vitis vinifera), 5'ss of exon 16
GATGAAGCTCTACTTACAGATTGGAAGCAGCAGTTGGATCGTGATGTTGAAACCCTTAAAGCCAAATCAAATATTGGTAGCATTCGCATGgtaagc-tgcagaa-----tagaggacaacattatacttgtcccttcaaactta--atattttccattgtcaattgtgtatttttctttaaactgaagggcctgtgat
|||||  | || |||   |||||||||||||||||||| ||||||| |||||| || |||||  |  |||| |||| || ||||||    || ||  | ||  |     |     |||   ||    |  ||| |  |||  ||  |   || |  ||     || || ||   |||| |   ||     |       
GATGAGTCACTTCTTTTGGATTGGAAGCAGCAGTTGGACCGTGATGGTGAAACTCTAAAAGCACAGGCAAACATTGTTAACATTCGTTCAgtgagtattcaccagcttttttgaaacagtcttcctttattccttgtaaatgtataaggcttacactttctggttatgcatgaatctt-atgttgctcaac-------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67031399|gb|CO460148.1|CO460148
EST:     GTGATGTTGAAACCCTTAAAGC-AAATCAA-TATTGGTAGCATTCGCATG                         TTTCTGAGCCGCA-TGGAATTGA-TGCA-TGATCTTTGA-GAAT-ATTC-T
genomic: GTGATGTTGAAACCCTTAAAGCCAAATCAAATATTGGTAGCATTCGCATGgtaagctgca ... tgcaatgcagTTTCTGAGCCGCAATGGAATTGAATGCAATGATCTT-GAAGAATTATTCAT