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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTTCCTAACATCAAGTTCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCTgtgagttcatccggttattttgcaagttgttaccgttttgaaaagcgctgcgtttgtatttccgcgttattggggaatatcgtgaatgcttacttcgcag

Basic information

species Zea mays
transcript GRMZM2G122135_T01
intron # 12
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31357128|gb|CD441485.1|CD441485
EST:     TCAACGTTGCAAAAGTACTACAGTCACTTGTACCGATCCTCGATCAATCT                         GTCGTGGAGAAGACCGTGAAACCATGCCTTGTTGAGCTCAGCGAGGACCCT
genomic: TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCTgtgagttcat ... tacttcgcagGTCGTGGAGAAGACCGTGAAACCATGCCTTGTTGAGCTCAGCGAGGACCCT
EST: gi|18169928|gb|BM339768.1|BM339768
EST:     TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCT                         GTCGTGGAGAAGACCGTGAAACCATGCCTTGTTGAGCTCAGCGAGGACCCT
genomic: TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCTgtgagttcat ... tacttcgcagGTCGTGGAGAAGACCGTGAAACCATGCCTTGTTGAGCTCAGCGAGGACCCT
EST: gi|16377717|gb|BI992076.1|BI992076
EST:     TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCT                         GTCGTGGAGAAGACCGTGAAACCATGCCTTGTTGAGCTCAGCGAGG
genomic: TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCTgtgagttcat ... tacttcgcagGTCGTGGAGAAGACCGTGAAACCATGCCTTGTTGAGCTCAGCGAGG
EST: gi|5499176|gb|AI855043.1|AI855043
EST:     TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCT                         GTCGTGGAGAAGACCGTGAAACCATGCCTTGTTGAGCTCAGCGAGGACCCT
genomic: TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCTgtgagttcat ... tacttcgcagGTCGTGGAGAAGACCGTGAAACCATGCCTTGTTGAGCTCAGCGAGGACCCT
EST: gi|22549241|gb|BU101442.1|BU101442
EST:     TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCT                         GTCGTGGAGAAGACCGTGAAACCATGCCTTGTTGAGCTCAGCGAGGACCCT
genomic: TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCTgtgagttcat ... tacttcgcagGTCGTGGAGAAGACCGTGAAACCATGCCTTGTTGAGCTCAGCGAGGACCCT
EST: gi|18163119|gb|BM332958.1|BM332958
EST:     TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCT                         GTCGTGGAGAAGACCGTGAAACCATGCCTTGTTGAGCTCAGCGAGGACCCT
genomic: TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCTgtgagttcat ... tacttcgcagGTCGTGGAGAAGACCGTGAAACCATGCCTTGTTGAGCTCAGCGAGGACCCT
EST: gi|5018372|gb|AI714565.1|AI714565
EST:     TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCT                         GTCGTGGAGAAGACCGTGAAACCATGCCTTGTTGGGCTCAGCGAGGACCCT
genomic: TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCTgtgagttcat ... tacttcgcagGTCGTGGAGAAGACCGTGAAACCATGCCTTGTTGAGCTCAGCGAGGACCCT
EST: gi|84977249|gb|DW475671.1|DW475671
EST:     TCAACGTTGCAAAAGTACTACAGTCACTTGTACCGATCCTCGATCAATCT                         GTCGTGGAGAAGACCGTGAAACCATGCCTTGTTGAGCTCAGCGAGGACCCT
genomic: TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCTgtgagttcat ... tacttcgcagGTCGTGGAGAAGACCGTGAAACCATGCCTTGTTGAGCTCAGCGAGGACCCT
EST: gi|29545063|gb|CB605241.1|CB605241
EST:     TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCT                         GTCGTGGAGAAGACCGTGAAACCATGCCTTGTTGAGCTCAGCGAGGACCCT
genomic: TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCTgtgagttcat ... tacttcgcagGTCGTGGAGAAGACCGTGAAACCATGCCTTGTTGAGCTCAGCGAGGACCCT
EST: gi|13126315|gb|BG316885.1|BG316885
EST:     TCAACGTTGCAAAAGTACTAGAGTCACTTGTACCGATCCTCGATCAATCT                         GTCGTGGAGAAGACCGTGAAACCATGCCTTGTTGAGCTCAGCGAGGACCCT
genomic: TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCTgtgagttcat ... tacttcgcagGTCGTGGAGAAGACCGTGAAACCATGCCTTGTTGAGCTCAGCGAGGACCCT
EST: gi|5740565|gb|AI948255.1|AI948255
EST:     TCAACGTTGCAAAAGTACTAAAGTCCCTTGTACCGATCCTCGATCAATCT                         GTCGTGGAGAAGACCGTGAAACCATGCCTTGTTGAGCTCAGCGAGGACCCT
genomic: TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCTgtgagttcat ... tacttcgcagGTCGTGGAGAAGACCGTGAAACCATGCCTTGTTGAGCTCAGCGAGGACCCT
EST: gi|18172136|gb|BM347524.1|BM347524
EST:     TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCT                         GTCGTGGAGAAGACCGTGAAACCATGCCTTGTTGAGCTCAGCGAGGACCCT
genomic: TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCTgtgagttcat ... tacttcgcagGTCGTGGAGAAGACCGTGAAACCATGCCTTGTTGAGCTCAGCGAGGACCCT
EST: gi|21891388|gb|BQ744601.1|BQ744601
EST:     TCAACGTTGCAAAAGTACTAAAGTCCCTTGTACCGATCCTCGATCAATCT                         GTCGTGGAGAAGACCGTGAAACCATGCCTTGTTGAGCTCAGCGAGGACCCT
genomic: TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCTgtgagttcat ... tacttcgcagGTCGTGGAGAAGACCGTGAAACCATGCCTTGTTGAGCTCAGCGAGGACCCT
EST: gi|32848539|gb|CD988220.1|CD988220
EST:     ACCGATCCTCGATCAATCT                         GTCGTGGAGAAGACCGTGAAACCATGCCTTGTTGAGCTCAGCGAGGACCCT
genomic: ACCGATCCTCGATCAATCTgtgagttcat ... tacttcgcagGTCGTGGAGAAGACCGTGAAACCATGCCTTGTTGAGCTCAGCGAGGACCCT
EST: gi|31362520|gb|CD446877.1|CD446877
EST:     TCAACGTTGCAAAAGTACTACAGTCACTTGTACCGATCCTCGATCAATCT                         GTCGTGGAGAAGACCGTGAAACCATGCCTTGTTGAGCTCAGCGAGGACCCT
genomic: TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCTgtgagttcat ... tacttcgcagGTCGTGGAGAAGACCGTGAAACCATGCCTTGTTGAGCTCAGCGAGGACCCT
EST: gi|37393714|gb|CF634122.1|CF634122
EST:     TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCT                         GTCGTGGAGAAGACCGTGAAACCATGCCTTGTTGAGCTCAGCGAGGACCCT
genomic: TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCTgtgagttcat ... tacttcgcagGTCGTGGAGAAGACCGTGAAACCATGCCTTGTTGAGCTCAGCGAGGACCCT
EST: gi|29947616|gb|CB816748.1|CB816748
EST:     TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCT                         GTCGTGGAGAAGACCGTGAAACCATGCCTTGTTGAGCTCAGCGAGGACCCT
genomic: TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCTgtgagttcat ... tacttcgcagGTCGTGGAGAAGACCGTGAAACCATGCCTTGTTGAGCTCAGCGAGGACCCT
EST: gi|17931830|gb|BM268790.1|BM268790
EST:     TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCT                         GTCGTGGAGAAGACCGTGAAACCATGCCTTGTTGAGCTCAGCGAGGACCCT
genomic: TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCTgtgagttcat ... tacttcgcagGTCGTGGAGAAGACCGTGAAACCATGCCTTGTTGAGCTCAGCGAGGACCCT
EST: gi|18173255|gb|BM348643.1|BM348643
EST:     TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCT                         GTCGTGGAGAAGACCGTGAAACCATGCCTTGTTGAGCTCAGCGAGGACCCT
genomic: TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCTgtgagttcat ... tacttcgcagGTCGTGGAGAAGACCGTGAAACCATGCCTTGTTGAGCTCAGCGAGGACCCT
EST: gi|60352636|gb|DN219609.1|DN219609
EST:     TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCT                         -------A-----CCGTGAAACCATGCCTTGTTGAGCTCAGCGAGGACCCT
genomic: TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCTgtgagttcat ... tacttcgcagGTCGTGGAGAAGACCGTGAAACCATGCCTTGTTGAGCTCAGCGAGGACCCT
EST: gi|24763713|gb|CA398884.1|CA398884
EST:     TCAACGTTGCAAAAGTACTACAGTCACTTGTACCGATCCTCGATCAATCT                         GTCGTGGAGAAGACCGTGAAACCATGCCTTGTTGAGCTCAGCGAGGACCCT
genomic: TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCTgtgagttcat ... tacttcgcagGTCGTGGAGAAGACCGTGAAACCATGCCTTGTTGAGCTCAGCGAGGACCCT
EST: gi|32801988|gb|CD954224.1|CD954224
EST:     GATCCTCGATCAATCT                         GTCGTGGAGAAGACCGTGAAACCATGCCTTGTTGAGCTCAGCGAGGACCCT
genomic: GATCCTCGATCAATCTgtgagttcat ... tacttcgcagGTCGTGGAGAAGACCGTGAAACCATGCCTTGTTGAGCTCAGCGAGGACCCT
EST: gi|16922583|gb|BM075638.1|BM075638
EST:     TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCT                         GTCGTGGAGAAGACCGTGAAACCATGCCTTGTTGAGCTCAGCGAGGACCCT
genomic: TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCTgtgagttcat ... tacttcgcagGTCGTGGAGAAGACCGTGAAACCATGCCTTGTTGAGCTCAGCGAGGACCCT
EST: gi|60343317|gb|DN210290.1|DN210290
EST:     TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCT                         GTCGTGGAGAAGACCGTGAAACCATGCCTTGTTGAGCTCAGCGAGGACCCT
genomic: TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCTgtgagttcat ... tacttcgcagGTCGTGGAGAAGACCGTGAAACCATGCCTTGTTGAGCTCAGCGAGGACCCT
EST: gi|20803005|gb|BQ294055.1|BQ294055
EST:     TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCT                         GTCGTGGAGAAGACCGTGAAACCATGCCTTGTTGAGCTCAGCGAGGACCCT
genomic: TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCTgtgagttcat ... tacttcgcagGTCGTGGAGAAGACCGTGAAACCATGCCTTGTTGAGCTCAGCGAGGACCCT
EST: gi|17930245|gb|BM267205.1|BM267205
EST:     TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCT                         GTCGTGGAGAAGACCGTGAAACCATGCCTTGTTGAGCTCAGCGAGGACCCT
genomic: TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCTgtgagttcat ... tacttcgcagGTCGTGGAGAAGACCGTGAAACCATGCCTTGTTGAGCTCAGCGAGGACCCT
EST: gi|17930061|gb|BM267021.1|BM267021
EST:     TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCT                         GTCGTGGAGAAGACCGTGAAACCATGCCTTGTTGAGCTCAGCGAGGACCCT
genomic: TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCTgtgagttcat ... tacttcgcagGTCGTGGAGAAGACCGTGAAACCATGCCTTGTTGAGCTCAGCGAGGACCCT
EST: gi|37387213|gb|CF630799.1|CF630799
EST:     TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCT                         GTCGTGGAGAAGACCGTGAAACCATGCCTTGTTGAGCTCAGCGAGGACCCT
genomic: TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCTgtgagttcat ... tacttcgcagGTCGTGGAGAAGACCGTGAAACCATGCCTTGTTGAGCTCAGCGAGGACCCT
EST: gi|40336631|gb|CK370701.1|CK370701
EST:     TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCT                         GTCGTGGAGAAGACCGTGAAACCATGCCTTGTTGAGCTCAGCGAGGACCCT
genomic: TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCTgtgagttcat ... tacttcgcagGTCGTGGAGAAGACCGTGAAACCATGCCTTGTTGAGCTCAGCGAGGACCCT
EST: gi|18169253|gb|BM339093.1|BM339093
EST:     TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCT                         GTCGTGGAGAAGACCGTGAAACCATGCCTTGTTGAGCTCAGCGAGGACCCT
genomic: TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCTgtgagttcat ... tacttcgcagGTCGTGGAGAAGACCGTGAAACCATGCCTTGTTGAGCTCAGCGAGGACCCT
EST: gi|18164243|gb|BM334082.1|BM334082
EST:     TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCT                         GTCGTGGAGAAGACCGTGAAACCATGCCTTGTTGAGCTCAGCGAGGACCCT
genomic: TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCTgtgagttcat ... tacttcgcagGTCGTGGAGAAGACCGTGAAACCATGCCTTGTTGAGCTCAGCGAGGACCCT
EST: gi|211206778|gb|FL154154.1|FL154154
EST:     TCAACGTTGCAAAAGTACTACAGTCACTTGTACCGATCCTCGATCAATCT                         GTCGTGGAGAAGACCGTGAAACCATGCCTTGTTGAGCTCAGCGAGGACCCT
genomic: TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCTgtgagttcat ... tacttcgcagGTCGTGGAGAAGACCGTGAAACCATGCCTTGTTGAGCTCAGCGAGGACCCT
EST: gi|18167158|gb|BM336997.1|BM336997
EST:     TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCT                         GTCGTGGAGAAGACCGTGAAACCATGCCTTGTTGAGCTCAGCGAGGACCCT
genomic: TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCTgtgagttcat ... tacttcgcagGTCGTGGAGAAGACCGTGAAACCATGCCTTGTTGAGCTCAGCGAGGACCCT
EST: gi|37388540|gb|CF631479.1|CF631479
EST:     TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCT                         GTCGTGGAGAAGACCGTGAAACCATGCCTTGTTGAGCTCAGCGAGGACCCT
genomic: TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCTgtgagttcat ... tacttcgcagGTCGTGGAGAAGACCGTGAAACCATGCCTTGTTGAGCTCAGCGAGGACCCT
EST: gi|78025113|gb|DV493500.1|DV493500
EST:     TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCT                         GTCGTGGAGAAGACCGTGAAACCATGCCTTGTTGAGCTCAGCGAGGACCCT
genomic: TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCTgtgagttcat ... tacttcgcagGTCGTGGAGAAGACCGTGAAACCATGCCTTGTTGAGCTCAGCGAGGACCCT
EST: gi|78119292|gb|DV537676.1|DV537676
EST:     TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCT                         -------A-----CCGTGAAACCATGCCTTGTTGAGCTCAGCGAGGACCCT
genomic: TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCTgtgagttcat ... tacttcgcagGTCGTGGAGAAGACCGTGAAACCATGCCTTGTTGAGCTCAGCGAGGACCCT
EST: gi|6056718|gb|AW091123.1|AW091123
EST:     TCAACGTTGCAAAAGTACTACAGTCACTTGTACCGATCCTCGATCAATCT                         GTCGTGGAGAAGACCGTGAAACCATGCCTTGTTGAGCTCAGCGAGGACCCT
genomic: TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCTgtgagttcat ... tacttcgcagGTCGTGGAGAAGACCGTGAAACCATGCCTTGTTGAGCTCAGCGAGGACCCT
EST: gi|24766051|gb|CA401209.1|CA401209
EST:     TCAACGTTGCAAAAGTACTACAGTCACTTGTACCGATCCTCGATCAATCT                         GTCGTGGAGAAGACCGTGAAACCATGCCTTGTTGAGCTCAGCGAGGACCCT
genomic: TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCTgtgagttcat ... tacttcgcagGTCGTGGAGAAGACCGTGAAACCATGCCTTGTTGAGCTCAGCGAGGACCCT
EST: gi|60349044|gb|DN216017.1|DN216017
EST:     TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCT                         GTCGTGGAGAAGACCGTGAAACCATGCCTTGTTGAGCTCAGCGAGGACCCT
genomic: TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCTgtgagttcat ... tacttcgcagGTCGTGGAGAAGACCGTGAAACCATGCCTTGTTGAGCTCAGCGAGGACCCT
EST: gi|31362029|gb|CD446386.1|CD446386
EST:     TCAACGTTGCAAAAGTACTACAGTCACTTGTACCGATCCTCGATCAATCT                         GTCGTGGAGAAGACCGTGAAACCATGCCTTGTTGAGCTCAGCGAGGACCCT
genomic: TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCTgtgagttcat ... tacttcgcagGTCGTGGAGAAGACCGTGAAACCATGCCTTGTTGAGCTCAGCGAGGACCCT
EST: gi|18175671|gb|BM350900.1|BM350900
EST:     TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCT                         GTCGTGGAGAAGACCGTGAAACCATGCCTTGTTGAGCTCAGCGAGGACCCT
genomic: TCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCTgtgagttcat ... tacttcgcagGTCGTGGAGAAGACCGTGAAACCATGCCTTGTTGAGCTCAGCGAGGACCCT