1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
TGTTCAAGTATCAAAGAGGCCTACAGCTTTTGGAGCTCTGTTTGGAAAGGCAGCTGCTGGAAGAAGGCCAGATCTTTTCCTAGGATTTTCAAATGTTCAGgtattatctacaattttctgtcgtaactgttgatctcagtggtggtggtattgaacccttgtatctaggaaggtgccctttccatgaatcaaattactgc...
species | Zea mays |
transcript | GRMZM2G118917_T02 |
intron # | 12 |
splice site | 5' |
intron type | U2 |
EST: CAGCTGCTGGAAGAAGGCCAGATCTTTTCCTAGGATTTTCAAATGTTCAG GGTAAGACTAAGGTGGACAAGATAACGTCTTCCGTGGTEST: gi|211340621|gb|FL361359.1|FL361359
genomic: CAGCTGCTGGAAGAAGGCCAGATCTTTTCCTAGGATTTTCAAATGTTCAGgtattatcta ... ataacttcagGGTAAGACTAAGGTGGACAAGATAACGTCTTCCGTGGT
EST: GCTGCTGGAAGAAGGCCAGATCTTTTCCTAGGATTTTCAAATGTTCAG GGTAAGACTAAGGTGGACAAGATAACGTCTTCCGTGGTACTTCCTTTTCATEST: gi|60337067|gb|DN204040.1|DN204040
genomic: GCTGCTGGAAGAAGGCCAGATCTTTTCCTAGGATTTTCAAATGTTCAGgtattatcta ... ataacttcagGGTAAGACTAAGGTGGACAAGATAACGTCTTCCGTGGTACTTCCTTTTCAT
EST: CAGCTGCTGGAAGAAGGCCAGATCTTTTCCTAGGATTTTCAAATGTTCAG GGTAAGACTAAGGTGGACAAGATAACGTCTTCCGTGGTACTTCCTTTTCATEST: gi|26456572|gb|CA828155.1|CA828155
genomic: CAGCTGCTGGAAGAAGGCCAGATCTTTTCCTAGGATTTTCAAATGTTCAGgtattatcta ... ataacttcagGGTAAGACTAAGGTGGACAAGATAACGTCTTCCGTGGTACTTCCTTTTCAT
EST: CAGCTGCTGGAAGAAGGCCAGATCTTTTCCTAGGATTTTCAAATGTTCAG GGTAAGACTAAGGTGGACAAGATAACGTCTTCCGTGGTACTTCCTTTTCATEST: gi|211193425|gb|FL343339.1|FL343339
genomic: CAGCTGCTGGAAGAAGGCCAGATCTTTTCCTAGGATTTTCAAATGTTCAGgtattatcta ... ataacttcagGGTAAGACTAAGGTGGACAAGATAACGTCTTCCGTGGTACTTCCTTTTCAT
EST: CAGCTGCTGGAAGAAGGCCAGATCTTTTCCTAGGATTTTCAAATGTTCAG GGTAAGACTAAGGTGGACAAGATAACGTCTTCCGTGGTACTTCCTTTTCATEST: gi|20301496|gb|BQ164439.1|BQ164439
genomic: CAGCTGCTGGAAGAAGGCCAGATCTTTTCCTAGGATTTTCAAATGTTCAGgtattatcta ... ataacttcagGGTAAGACTAAGGTGGACAAGATAACGTCTTCCGTGGTACTTCCTTTTCAT
EST: CAGCTGCTGGAAGAAGGCCAGATCTTTTCCTAGGATTTTCAAATGTTCAG GGTAAGACTAAGGTGGACAAGATAACGTCTTCCGTGGTACTTCCTTTGCATEST: gi|211301949|gb|FL333158.1|FL333158
genomic: CAGCTGCTGGAAGAAGGCCAGATCTTTTCCTAGGATTTTCAAATGTTCAGgtattatcta ... ataacttcagGGTAAGACTAAGGTGGACAAGATAACGTCTTCCGTGGTACTTCCTTTTCAT
EST: CAGCTGCTGGAAGAAGGCCAGATCTTTTCCTAGGATTTTCAAATGTTCAG GGTAAGACTAAGGTGGACAAGATAACGTCTTCCGTGGTACTTCCTTTTCATEST: gi|78108318|gb|DV526736.1|DV526736
genomic: CAGCTGCTGGAAGAAGGCCAGATCTTTTCCTAGGATTTTCAAATGTTCAGgtattatcta ... ataacttcagGGTAAGACTAAGGTGGACAAGATAACGTCTTCCGTGGTACTTCCTTTTCAT
EST: CAGCTGCTGGAAGAAGGCCAGATCTTTTCCTAGGATTTTCAAATGTTCAG GGTAAGACTAAGGTGGACAAGATAACGTCTTCCGTGGTACTTCCTTTTCATEST: gi|60396058|gb|DN228927.1|DN228927
genomic: CAGCTGCTGGAAGAAGGCCAGATCTTTTCCTAGGATTTTCAAATGTTCAGgtattatcta ... ataacttcagGGTAAGACTAAGGTGGACAAGATAACGTCTTCCGTGGTACTTCCTTTTCAT
EST: CAGCTGCTGGAAGAAGGCCAGATCTTTTCCTAGGATTTTCAAATGTTCAG GGTAAGACTAAGGTGGACAAGATAACGTCTTCCGTGGTACTTCCTTTTCATEST: gi|211248404|gb|FL329614.1|FL329614
genomic: CAGCTGCTGGAAGAAGGCCAGATCTTTTCCTAGGATTTTCAAATGTTCAGgtattatcta ... ataacttcagGGTAAGACTAAGGTGGACAAGATAACGTCTTCCGTGGTACTTCCTTTTCAT
EST: CAGCTGCTGGAAGAAGGCCAGATCTTTTCCTAGGATTTTCAAATGTTCAG GGTAAGACTAAGGTGGACAAGATAACGTCTTCCGTGGTACT
genomic: CAGCTGCTGGAAGAAGGCCAGATCTTTTCCTAGGATTTTCAAATGTTCAGgtattatcta ... ataacttcagGGTAAGACTAAGGTGGACAAGATAACGTCTTCCGTGGTACT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGTTCAAGTATCAAAGAGGCCTACAGCTTTTGGAGCTCTGTTTGGAAAGGCAGCTGCTGGAAGAAGGCCAGATCTTTTCCTAGGATTTTCAAATGTTCAGgtattatctacaattttctgtcgtaactgttgatctcagtggtggtggtattgaacccttgtatctaggaaggtgccctttccatgaatcaaattactgc
- - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG