Sequence
atgc intronic sequence ATGC exonic sequenceTTGCCTCTTCATTTGCTACGACCTGATCCGGCCGGATGTCGCTCTTGAGCTTGCATGGATGAACAACATGGTGGACTTTGCCTTCCCGTACCTGTTACAGgtacgtagtaatttctgtccatgttcgtgccgacgtctatttacatacagttaccatagtaacatccctactgtgctatgtgactgtgtgcgcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G115138_T01 (Zea mays), 5'ss of exon 12
lower sequence: LOC_Os12g01390.1 (Oryza sativa), 5'ss of exon 28
TTGCCTCTTCATTTGCTACGACCTGATCCGGCCGGATGTCGCTCTTGAGCTTGCATGGATGAACAACATGGTGGACTTTGCCTTCCCGTACCTGTTACAGgtacgtagtaatttctgtccatgttcgtgccgacgtctatttacatacagtta-ccatagtaacatccctactgtgctatgtgactgtgtgcgcag
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TTGTCTCTTTATTTGTTATGACTTGATCCGTGCGGATGTTGCTCTTGAGCTTGCATGGATGAACAACATGGTGGACTTTGCATTCCCCTATCTGTTACAGgtatcttgt---ttccgttcatgtgtttgggactattcatttacgtacagttttccataacaacaaagcttgcttcatgtgcag------------
upper sequence: GRMZM2G115138_T01 (Zea mays), 5'ss of exon 12
lower sequence: LOC_Os11g01380.1 (Oryza sativa), 5'ss of exon 28
TTGCCTCTTCATTTGCTACGACCTGATCCGGCCGGATGTCGCTCTTGAGCTTGCATGGATGAACAACATGGTGGACTTTGCCTTCCCGTACCTGTTACAGgtacgtagtaatttctgtccatgttcgtgccgacgtctatttacatacagtta-ccatagtaacatccctactgtgctatgtgactgtgtgcgcag
||| ||||| ||||| || ||| ||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| || |||||||||||| | || ||| || ||||| || | |||||| |||||| ||||| |||| || | | ||
TTGTCTCTTTATTTGTTATGACTTGATCCGTGCGGATGTTGCTCTTGAGCTTGCATGGATGAACAACATGGTGGACTTTGCATTCCCCTATCTGTTACAGgtatcttgt---ttccgttcatgtgtttgggactattcatttacgaacagttttccataacaacaaagcttgcttcgtgtgcag------------
upper sequence: GRMZM2G115138_T01 (Zea mays), 5'ss of exon 12
lower sequence: GLYMA02G39360.1 (Glycine max), 5'ss of exon 28
TTGCCTCTTCATTTGCTACGACCTGATCCGGCCGGATGTCGCTCTTGAGCTTGCATGGATGAACAACATGGTGGACTTTGCCTTCCCGTACCTGTTACAGgtacgt----------agtaatttctgtccatgt----tcgtgccgacgtctatttacatacagttaccatagtaacatccctactgtgctatgtgactgtgtgcgcag-------------------------------------------------------
|||||||||| | || || || | || ||||| ||||| ||||||||||| || ||||||||||| ||| | || ||||| ||||| ||||| ||||||||| | || || | | |||| | | || | | | | || | || || | | | | | | | || | ||
TTGCCTCTTCGTCTGTTATGATATAATACGGCCAGATGTTGCTCTTGAGCTAGCTTGGATGAACAATATGATTGATTTTGCTTTCCCATACCTCTTACAGgtatattttcccctggggtttcttttttttatgtgaaatggggctaaaagcccaaggaaaagagactaaacaggaatgacacgaggggtttctttcgctatatgtattactggatgatttttcttccttttattgataaccattttttaatatttcccccctag
upper sequence: GRMZM2G115138_T01 (Zea mays), 5'ss of exon 12
lower sequence: GLYMA14G37510.1 (Glycine max), 5'ss of exon 26
TTGCCTCTTCATTTGCTACGACCTGATCCGGCCGGATGTCGCTCTTGAGCTTGCATGGATGAACAACATGGTGGACTTTGCCTTCCCGTACCTGTTACAGgtacgtagtaatttctgtccatgttcgtgccgacgtctatt--tacatacagttaccatagtaacatccctactgtgctatgtgactgtgtgcgcag
||||||||| | || || || | || ||||| ||||| ||||||||||| || ||||||||||| ||| | || ||||| ||||| ||||| ||||||||| | | | | |||| | | | |||| | || || | | || | | | | | | | ||
TTGCCTCTTTGTCTGTTATGATATAATACGGCCAGATGTTGCTCTTGAGCTAGCTTGGATGAACAATATGATTGATTTTGCTTTCCCATACCTCTTACAGgtatattttccactggggtttcgttca---ctatatttattactggatgatttttcttccttttaatgataatcattttttaatatttcccccctag
upper sequence: GRMZM2G115138_T01 (Zea mays), 5'ss of exon 12
lower sequence: AT3G08530.1 (Arabidopsis thaliana), 5'ss of exon 28
TTGCCTCTTCATTTGCTACGACCTGATCCGGCCGGATGTCGCTCTTGAGCTTGCATGGATGAACAACATGGTGGACTTTGCCTTCCCGTACCTGTTACAGgta---cgtagtaatttctgtccatgttcgtgccgacgtctatttacatacagttaccatagtaacatccctactgtgctatgtgactgtgtgcgcag----------------
|| ||||| | || || ||| | ||||| || || || ||||| || ||||| ||||| ||||| ||| ||||||||||||||||||| || | ||||| | ||| | || | ||| | | || ||| | | | | || || | | | | |
ATGTCTCTTTGTATGTTATGACTTAATCCGACCAGACGTGGCTCTAGAACTTGCCTGGATCAACAATATGATGGACTTTGCCTTCCCGTATCTCCTCCAGgtgatctatcctaaccctcaaataaactcttttgattctctgctca-atgaggttggaaccattatttgaacgctatgatgaattctcttcttcctgtcgttttttctttgcag
upper sequence: GRMZM2G115138_T01 (Zea mays), 5'ss of exon 12
lower sequence: Vv13s0067g01290.t01 (Vitis vinifera), 5'ss of exon 28
TTGCCTCTTCATTTGCTACGACCTGATCCGGCCGGATGTCGCTCTTGAGCTTGCATGGATGAACAACATGGTGGACTTTGCCTTCCCGTACCTGTTACAGgt-acgtagtaatttctgtccatgttcgtgccgacgtctatttacatacagttaccatagtaacat----ccctactgtgctatgtgactgtgtgcgcag-
||||||||| | ||||||||| | || || || || | |||||||| ||||| ||||| ||||| ||||| ||||||||||| || || ||||| ||||| | | | |||| || ||| | | | | | | | | || | | || | | | | | || || | || | | |
TTGCCTCTTTGTGTGCTACGACTTAATTCGTCCAGACATTGCTCTTGAACTTGCCTGGATTAACAATATGGTTGACTTTGCCTTGCCATATCTGTTGCAGgtgatctgtttgcttcttcccttgt-cattctcatatattaggaattttaggagggaaattagcttgcgactttcccagcctgtgggccttttttagagct
upper sequence: GRMZM2G115138_T01 (Zea mays), 5'ss of exon 12
lower sequence: Vv06s0004g06860.t01 (Vitis vinifera), 5'ss of exon 28
TTGCCTCTTCATTTGCTACGACCTGATCCGGCCGGATGTCGCTCTTGAGCTTGCATGGATGAACAACATGGTGGACTTTGCCTTCCCGTACCTGTTACAGgtacgtagtaatttctgtccatgttcgtgccgacgtctatttacatacagttaccatagtaacatccctactgtgctatgtgactgtgtgcgcag
|||||||| | || ||||| | || ||||| || || | ||||||||||||||||||||||| ||| | |||||||||||||| || || ||||||||| | || || ||||| | | || || | || ||| | | | ||||| | || | | |
ATGCCTCTTTGTCTGTTACGATTTAATTCGGCCAGACGTTGTCCTTGAGCTTGCATGGATGAACAATATGATCGACTTTGCCTTCCCATATCTCTTACAGgtaaactatttgtttcacccttgttctatttggc------tttcaaatcgtcttcattttctctcaaccactgttc-attttttttcatag----
upper sequence: GRMZM2G115138_T01 (Zea mays), 5'ss of exon 12
lower sequence: EFJ13237 (Selaginella moellendorffii), 5'ss of exon 28
TTGCCTCTTCATTTGCTACGACCTGATCCGGCCGGATGTCGCTCTTGAGCTTGCATGGATGAACAACATGGTGGACTTTGCCTTCCCGTACCTGTTACAGgtacgtagtaatttctgtccatgttcgtgccgacgtctatttacatacagttaccatagtaacatccctactgtgctatgtgactgtgtgcgcag
||||| || | || ||||| |||||||||| || || || | |||||||| ||||| ||||||||| | ||||| ||||||| ||||||||||| ||| || || || | | || || | | | || || | || |||
CTGCCTGTTTACATGTTACGATTTGATCCGGCCCGACGTAGCATTGGAGCTTGCCTGGATAAACAACATGATCGACTTCTCCTTCCCTTACCTGTTACAAgta---agaccttggagttcttcctcatgacttctgacactttgctatcg--actctag------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|211415578|gb|FL028982.1|FL028982EST: TTGCATGGATGAACAACATGGTGGACTTTGCCTTCCCGTACCTGTTACAG TTCATTCGTGAATACACTAGCAAGGNGGATGATTTAGTGAAGGACAAGATC
genomic: TTGCATGGATGAACAACATGGTGGACTTTGCCTTCCCGTACCTGTTACAGgtacgtagta ... gtgtgcgcagTTCATTCGTGAATACACTAGCAAGGTGGATGATTTAGTGAAGGACAAGATC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TTGCCTCTTCATTTGCTACGACCTGATCCGGCCGGATGTCGCTCTTGAGCTTGCATGGATGAACAACATGGTGGACTTTGCCTTCCCGTACCTGTTACAGgtacgtagtaatttctgtccatgttcgtgccgacgtctatttacatacagttaccatagtaacatccctactgtgctatgtgactgtgtgcgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA