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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCACACCATGGGTTCGGATGGGTTGGCGAGTGGGCGAACACAGGgtaagacactcatgagatcttcttttaagagcattatattattactaagctcgacgtgtgggcgccaaagctgaagaactctccggccggtctgtgcag

Basic information

species Zea mays
transcript GRMZM2G113439_T01
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G113439_T01 (Zea mays), 5'ss of exon 12
lower sequence: LOC_Os02g34650.1 (Oryza sativa), 5'ss of exon 8
GGCACACCATGGGTTCGGATGGGTTGGCGAGTGGGCGAACACAGGgtaagacactcatgagatcttcttttaagagcattatatta-ttactaagctcgacgtgtgggc-gccaaagc-tga-agaactctccggccggtctgtgcag
 || |||||||| ||||||||||| |||||||||||||||||||||| |||  ||||| |    | ||  |  | ||| |  || | ||| | ||  | |    || |    |||| | ||| | |||    |      |   | |  
AGCTCACCATGGATTCGGATGGGTCGGCGAGTGGGCGAACACAGGgttagatgctcatca---ttgctcatccgtgcactccatcaattaatcagtccaattattgtgttatcaaaacatgagaaaacaggaccaaaaattattacca