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GTTGGGCTGCTGTACGACGAGGAATCGTTACAAAGCATTTTAGACATGACTTTTGATTGGACAAAGGAGGAAAGAGAGATGCTAAGACGGAAGgtatatcaaaataactgtgcactcattccttccgcgtgattttagtttttcccccttattgttggtggcacattttgggtttaacggtttaacccaactt...
species | Zea mays |
transcript | GRMZM2G111579_T01 |
intron # | 12 |
splice site | 5' |
intron type | U2 |
EST: ACATGACTTTTGATTGGACAAAGGAGGAAAGAGAGATGCTAAGACGGAAG GTACCATCGACTGGTTTGAAGACGCCGTTTCGTGATGGATATGTAAGAGATEST: gi|60341874|gb|DN208847.1|DN208847
genomic: ACATGACTTTTGATTGGACAAAGGAGGAAAGAGAGATGCTAAGACGGAAGgtatatcaaa ... tattggtcagGTACCATCGACTGGTTTGAAGACGCCGTTTCGTGATGGATATGTAAGAGAT
EST: ACATGACTTTTGATTGGACAAAGGAGGAAAGAGAGATGCTAAGACGGAAG GTACCATCGACTGGTTTGAAGACGCCGTTTCGTGATGGATATGTAAGAGATEST: gi|22715441|gb|BU197765.1|BU197765
genomic: ACATGACTTTTGATTGGACAAAGGAGGAAAGAGAGATGCTAAGACGGAAGgtatatcaaa ... tattggtcagGTACCATCGACTGGTTTGAAGACGCCGTTTCGTGATGGATATGTAAGAGAT
EST: ACATGACTTTTGATTGGACAAAGGAGGAAAGAGAGATGCTAAGACGGAAG GTACCATCGACTGGTTTGAAGACGCCGTTTCGTGATGGATATGTAAGAGATEST: gi|18964392|gb|BM660979.1|BM660979
genomic: ACATGACTTTTGATTGGACAAAGGAGGAAAGAGAGATGCTAAGACGGAAGgtatatcaaa ... tattggtcagGTACCATCGACTGGTTTGAAGACGCCGTTTCGTGATGGATATGTAAGAGAT
EST: ACATGACTTTTGATTGGACAAAGGAGGAAAGAGAGATGCTAAGACGGAAG GTACCATCGACTGGTTTGAAGACGCCGTTTCGTGATGGATATGTAAGAGATEST: gi|18179132|gb|BM380342.1|BM380342
genomic: ACATGACTTTTGATTGGACAAAGGAGGAAAGAGAGATGCTAAGACGGAAGgtatatcaaa ... tattggtcagGTACCATCGACTGGTTTGAAGACGCCGTTTCGTGATGGATATGTAAGAGAT
EST: ACATGACTTTTGATTGGACAAAGGAGGAAAGAGAGATGCTAAGACGGAAG GTACCATCGACTGGTTTGAAGACGCCGTTTCGTGATGGATATGTAAGAGAT
genomic: ACATGACTTTTGATTGGACAAAGGAGGAAAGAGAGATGCTAAGACGGAAGgtatatcaaa ... tattggtcagGTACCATCGACTGGTTTGAAGACGCCGTTTCGTGATGGATATGTAAGAGAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTGGGCTGCTGTACGACGAGGAATCGTTACAAAGCATTTTAGACATGACTTTTGATTGGACAAAGGAGGAAAGAGAGATGCTAAGACGGAAGgtatatcaaaataactgtgcactcattccttccgcgtgattttagtttttcccccttattgttggtggcacattttgggtttaacggtttaacccaactt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caaaataa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccttccgc