1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
GGTGGCAATAACATTCACTCCAAAGCTGTTAGTGCAGTAGCGGAAACTTTGAAGGATAATGCAGTGCTGACAACAgtaagtcataagatatggggtaaaggctctgttcgatgtcctcaagttataacttataagactaattcagaatatgcattgtag
species | Zea mays |
transcript | GRMZM2G110289_T01 |
intron # | 12 |
splice site | 5' |
intron type | U2 |
EST: CTGTTAGTGCAGTAGCGGAAACTTTGAAGGATAATGCAGTGCTGACAACA CTGGATTTGAGCTACAATCCAATTGGATCAGACGGAGTAAAGGCTTTGTGCEST: gi|32840315|gb|CD979996.1|CD979996
genomic: CTGTTAGTGCAGTAGCGGAAACTTTGAAGGATAATGCAGTGCTGACAACAgtaagtcata ... tgcattgtagCTGGATTTGAGCTACAATCCAATTGGATCAGACGGAGTAAAGGCTTTGTGC
EST: CTGTTAGTGCAATAGCGGAAACTTTGAAGGATAATGCAGTGCTGACAACA CTGGATTTGAGCTACAATCCAATTGGATCAGACGGAGTAAAGGCTTTGTGCEST: gi|67010636|gb|CO439385.1|CO439385
genomic: CTGTTAGTGCAGTAGCGGAAACTTTGAAGGATAATGCAGTGCTGACAACAgtaagtcata ... tgcattgtagCTGGATTTGAGCTACAATCCAATTGGATCAGACGGAGTAAAGGCTTTGTGC
EST: CTGTTAGTGCAATAGCGGAAACTTTGAAGGATAATGCAGTGCTGACAACA CTGGATTTGAGCTACAATCCAATTGTATCAGACGGAGTAAAGGCTTTGTGCEST: gi|60346680|gb|DN213653.1|DN213653
genomic: CTGTTAGTGCAGTAGCGGAAACTTTGAAGGATAATGCAGTGCTGACAACAgtaagtcata ... tgcattgtagCTGGATTTGAGCTACAATCCAATTGGATCAGACGGAGTAAAGGCTTTGTGC
EST: CTGTTAGTGCAGTAGCGGAAACTTTGAAGGATAATGCAGTGCTGACAACA CTGGATTTGAGCTACAATCCAATTGGATCAGACGGAGTAAAGGCTTTGTGCEST: gi|71763770|gb|DR961707.1|DR961707
genomic: CTGTTAGTGCAGTAGCGGAAACTTTGAAGGATAATGCAGTGCTGACAACAgtaagtcata ... tgcattgtagCTGGATTTGAGCTACAATCCAATTGGATCAGACGGAGTAAAGGCTTTGTGC
EST: CTGTTAGTGCAGTAGCGGAAACTTTGAAGGATAATGCAGTGCTGACAACA CTGGATTTGAGCTACAATCCAATTGGATCAGACGGAGTAAAGGCTTTGTGCEST: gi|12046108|gb|BF728247.1|BF728247
genomic: CTGTTAGTGCAGTAGCGGAAACTTTGAAGGATAATGCAGTGCTGACAACAgtaagtcata ... tgcattgtagCTGGATTTGAGCTACAATCCAATTGGATCAGACGGAGTAAAGGCTTTGTGC
EST: CTGTTAGTGCAATAGCGGAAACTTTGAAGGATAATGCAGTGCTGACAACA CTGGATTTGAGCTACAATCCAATTGGATCAGACGGAGTAAAGGCTTTGTGCEST: gi|32840421|gb|CD980102.1|CD980102
genomic: CTGTTAGTGCAGTAGCGGAAACTTTGAAGGATAATGCAGTGCTGACAACAgtaagtcata ... tgcattgtagCTGGATTTGAGCTACAATCCAATTGGATCAGACGGAGTAAAGGCTTTGTGC
EST: CTGTTAGTGCAATAGCGGAAACTTTGAAGGATAATGCAGTGCTGCCAACA CTGGATTTGAGCTACAATCCAATTGGATCAGACGGAGTAAAGGCTTTGTGCEST: gi|60355903|gb|DN222876.1|DN222876
genomic: CTGTTAGTGCAGTAGCGGAAACTTTGAAGGATAATGCAGTGCTGACAACAgtaagtcata ... tgcattgtagCTGGATTTGAGCTACAATCCAATTGGATCAGACGGAGTAAAGGCTTTGTGC
EST: TAGTGCAGTAGCGGAAACTTTGAAGGATAATGCAGTGCTGACAACA CTGGATTTGAGCTACAATCCAATTGGATCAGACGGAGTAAAGGCTTTGTGC
genomic: TAGTGCAGTAGCGGAAACTTTGAAGGATAATGCAGTGCTGACAACAgtaagtcata ... tgcattgtagCTGGATTTGAGCTACAATCCAATTGGATCAGACGGAGTAAAGGCTTTGTGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGTGGCAATAACATTCACTCCAAAGCTGTTAGTGCAGTAGCGGAAACTTTGAAGGATAATGCAGTGCTGACAACAgtaagtcataagatatggggtaaaggctctgttcgatgtcctcaagttataacttataagactaattcagaatatgcattgtag
- - - - - - - - - - - - - - - - - - - - - - - - TTGAAG