1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
ATTGAAGACCAGTGCGTGCTCACTTCCTGGGTTGCGACCCATGAGATTTTCTGAGGGGCAGATGATCATGCCACTTGCTCACACAGTTGAGAACGAGGAGgtaggtttgcagttatttcgtggaaagcctgtgtctttgtgaagctaattgatttcgttttcaccattagctctgttctcatggttgacttagttctattagatgtaccatgtgactcatagttactgtccttgactgatgaataattcacag
species | Zea mays |
transcript | GRMZM2G109987_T05 |
intron # | 12 |
splice site | 5' |
intron type | U2 |
EST: CTGAGGGGCAGATGATCATGCCACTTGCTCACACAGTTGAGAACGAGGAG ATTCTTGAAGTTGTCCGCCTTGAAGGTCAGCCTCTTACTCATGATGAAGCTEST: gi|211357661|gb|FL143936.1|FL143936
genomic: CTGAGGGGCAGATGATCATGCCACTTGCTCACACAGTTGAGAACGAGGAGgtaggtttgc ... taattcacagATTCTTGAAGTTGTCCGCCTTGAAGGTCAGCCTCTTACTCATGATGAAGCT
EST: CTGAGGGGCAGATGATCATGCCACTTGCTCACACAGTGGAGAACGAGGAG ATTCTTGAAGTTGTCCGCCTTGAAGGTCAACCTCTTACTCATGATGAAGCTEST: gi|50334712|gb|CO529838.1|CO529838
genomic: CTGAGGGGCAGATGATCATGCCACTTGCTCACACAGTTGAGAACGAGGAGgtaggtttgc ... taattcacagATTCTTGAAGTTGTCCGCCTTGAAGGTCAGCCTCTTACTCATGATGAAGCT
EST: CTGAGGGGCAGATGATCATGCCACTTGCTCACACAGTTGAGAACGAGGAG ATTCTTGAAGTTGTCCGCCTTGAAGGTCAGCCTCTTACTCATGATGAAGCTEST: gi|93012109|gb|EB637629.1|EB637629
genomic: CTGAGGGGCAGATGATCATGCCACTTGCTCACACAGTTGAGAACGAGGAGgtaggtttgc ... taattcacagATTCTTGAAGTTGTCCGCCTTGAAGGTCAGCCTCTTACTCATGATGAAGCT
EST: CTGAGGGGCAGATGATCATGCCACTTGCTCACACAGTTGAGAACGAGGAG ATTCTTGAAGTTGTCCGCCTTGAAGGTCAGCCTCTTACTCATGATGAAGCTEST: gi|76923031|gb|DV169300.1|DV169300
genomic: CTGAGGGGCAGATGATCATGCCACTTGCTCACACAGTTGAGAACGAGGAGgtaggtttgc ... taattcacagATTCTTGAAGTTGTCCGCCTTGAAGGTCAGCCTCTTACTCATGATGAAGCT
EST: CTGAGGGGCAGATGATCATGCCACTTGCTCACACAGTTGAGAACGAGGAG ATTCTTGAAGTTGTCCGCCTTGAAGGTCAGCCTCTTACTCATGATGAAGCTEST: gi|60336823|gb|DN203796.1|DN203796
genomic: CTGAGGGGCAGATGATCATGCCACTTGCTCACACAGTTGAGAACGAGGAGgtaggtttgc ... taattcacagATTCTTGAAGTTGTCCGCCTTGAAGGTCAGCCTCTTACTCATGATGAAGCT
EST: CTGAGGGGCAGATGATCATGCCACTTGCTCACACAGTTGAGAACGAGGAG ATTCTTGAAGTTGTCCGCCTTGAAGGTCAGCCTCTTACTCATGATGAAGCT
genomic: CTGAGGGGCAGATGATCATGCCACTTGCTCACACAGTTGAGAACGAGGAGgtaggtttgc ... taattcacagATTCTTGAAGTTGTCCGCCTTGAAGGTCAGCCTCTTACTCATGATGAAGCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATTGAAGACCAGTGCGTGCTCACTTCCTGGGTTGCGACCCATGAGATTTTCTGAGGGGCAGATGATCATGCCACTTGCTCACACAGTTGAGAACGAGGAGgtaggtttgcagttatttcgtggaaagcctgtgtctttgtgaagctaattgatttcgttttcaccattagctctgttctcatggttgacttagttctattagatgtaccatgtgactcatagttactgtccttgactgatgaataattcacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG