1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
GTTGTTGATGCACTTTGTGATGTCGTTTCAGCCTCACCAACCAAGGCATCAGCTGCTATCGTTCTCCAGgtcaagatattgctatattgcacgtttggtcaaaactaaatttggtttaaagtttgttcgatttatttcaaaacaaattcaattttctttttctgattaa...
species | Zea mays |
transcript | GRMZM2G107101_T06 |
intron # | 12 |
splice site | 5' |
intron type | U2 |
EST: TGTCGTTTCAGCCTCACCAACCAAAGCATCAGCTGCTATCGTTCTCCCAG -CCGAGAAGGACTTGCAGCCTTGGATTGCTACAGATGACGAACAAGGTCAEST: gi|91873510|gb|EB403467.1|EB403467
genomic: TGTCGTTTCAGCCTCACCAACCAAGGCATCAGCTGCTATCGTTCTCC-AGgtcaagatat ... tttttcgcagGCCGAGAAGGACTTGCAGCCTTGGATTGCTAGAGATGACGAACAAGGTCA
EST: ATGTCGTTTCAGCCTCACCAACCAAGGCATCAGCTGCTATCGTTCTCCAG GCCGAGAAGGACTTGCAGCCTTGGATTGCTAGAGATGACGAACAAGGTCAGEST: gi|211384284|gb|FL369285.1|FL369285
genomic: ATGTCGTTTCAGCCTCACCAACCAAGGCATCAGCTGCTATCGTTCTCCAGgtcaagatat ... tttttcgcagGCCGAGAAGGACTTGCAGCCTTGGATTGCTAGAGATGACGAACAAGGTCAG
EST: ATGTCGTTTCAGCCTCACCAACCAAGGCATCAGCTGCTATCGTTCTCCAG GCCGAGAAGGACTTGCAGCCTTGGWTTGCTAGAGATGACGAACAAGGTCAGEST: gi|67013730|gb|CO442479.1|CO442479
genomic: ATGTCGTTTCAGCCTCACCAACCAAGGCATCAGCTGCTATCGTTCTCCAGgtcaagatat ... tttttcgcagGCCGAGAAGGACTTGCAGCCTTGGATTGCTAGAGATGACGAACAAGGTCAG
EST: ATGTCGTTTCAGCCTCACCAACCAAGGCATCAGCTGCTATCGTTCTCCAG GCCGAGAAAGACTTGCAGCCTTGGATTGCTAGAGATGACGAACAAGGTCAGEST: gi|32838215|gb|CD977893.1|CD977893
genomic: ATGTCGTTTCAGCCTCACCAACCAAGGCATCAGCTGCTATCGTTCTCCAGgtcaagatat ... tttttcgcagGCCGAGAAGGACTTGCAGCCTTGGATTGCTAGAGATGACGAACAAGGTCAG
EST: ATGTCGTTTCAGCCTCACCAACCAAGGCATCAGCTGCTATCGTTCTCCAG GCCGAGAAGGACTTGCAGCCTTGGATTGCTAGAGATGACGAACAAGGTCAGEST: gi|211421009|gb|FL393428.1|FL393428
genomic: ATGTCGTTTCAGCCTCACCAACCAAGGCATCAGCTGCTATCGTTCTCCAGgtcaagatat ... tttttcgcagGCCGAGAAGGACTTGCAGCCTTGGATTGCTAGAGATGACGAACAAGGTCAG
EST: ATGTCGTTTCAGCCTCACCAACCAAGGCATCAGCTGCTATCGTTCTCCAG GCCGAGAAGGACTTGCAGCCTTGGATTGCTAGAGATGACGAACAAGGTCAGEST: gi|13490512|gb|BG517276.1|BG517276
genomic: ATGTCGTTTCAGCCTCACCAACCAAGGCATCAGCTGCTATCGTTCTCCAGgtcaagatat ... tttttcgcagGCCGAGAAGGACTTGCAGCCTTGGATTGCTAGAGATGACGAACAAGGTCAG
EST: ATGTCGTTTCAGCCTCACCAACCAAGGCATCAGCTGCTATCGTTCTCCAG GCCGAGAAGGACTTGCAGCCTTGGATTGCTAGAGATGACGAACAAGGTCAGEST: gi|211306980|gb|FL381266.1|FL381266
genomic: ATGTCGTTTCAGCCTCACCAACCAAGGCATCAGCTGCTATCGTTCTCCAGgtcaagatat ... tttttcgcagGCCGAGAAGGACTTGCAGCCTTGGATTGCTAGAGATGACGAACAAGGTCAG
EST: ATGTCGTTTCAGCCTCACCAACCAAGGCATCAGCTGCTATCGTTCTCCAG GCCGAGAAGGACTTGCAGCCTTGGATTGCTAGAGATGACGAACAAGGTCAGEST: gi|211167624|gb|FL375018.1|FL375018
genomic: ATGTCGTTTCAGCCTCACCAACCAAGGCATCAGCTGCTATCGTTCTCCAGgtcaagatat ... tttttcgcagGCCGAGAAGGACTTGCAGCCTTGGATTGCTAGAGATGACGAACAAGGTCAG
EST: ATGTCGTTTCAGCCTCACCAACCAAGGCATCAGCTGCTATCGTTCTCCAG GCCGAGAAGGACTTGCAGCCTTGGATTGCTAGAGATGACGAACAAGGTCAGEST: gi|211533313|gb|FL400718.1|FL400718
genomic: ATGTCGTTTCAGCCTCACCAACCAAGGCATCAGCTGCTATCGTTCTCCAGgtcaagatat ... tttttcgcagGCCGAGAAGGACTTGCAGCCTTGGATTGCTAGAGATGACGAACAAGGTCAG
EST: ATGTCGTTTCAGCCTCACCAACCAAGGCATCAGCTGCTATCGTTCTCCAG GCCGAGAAGGACTTGCAGCCTTGGATTGCTAGAGATGACGAACAAGGTCAG
genomic: ATGTCGTTTCAGCCTCACCAACCAAGGCATCAGCTGCTATCGTTCTCCAGgtcaagatat ... tttttcgcagGCCGAGAAGGACTTGCAGCCTTGGATTGCTAGAGATGACGAACAAGGTCAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTGTTGATGCACTTTGTGATGTCGTTTCAGCCTCACCAACCAAGGCATCAGCTGCTATCGTTCTCCAGgtcaagatattgctatattgcacgtttggtcaaaactaaatttggtttaaagtttgttcgatttatttcaaaacaaattcaattttctttttctgattaa
- - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT