1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
GTTCTCACTGAGCCAAAGAATGCCCTGGGTAAGCAATTCAAGAAATTGTTTAGCATGAATGATgtgagtatgcttaccatgaaaacatgcagaaattagtatctccctagtgtctcaacttggctcagcattgggtttcag
species | Zea mays |
transcript | GRMZM2G101791_T02 |
intron # | 12 |
splice site | 5' |
intron type | U2 |
EST: CAAAGAATGCCCTGGGTAAGCAATTCAAGAAATTGTTTAGCATGAATGAT GTTAAGCTTCACTTTACAGATGGTGCACTTAGAATAATTGCCGAAAAGGCGEST: gi|5608481|gb|AI902058.1|AI902058
genomic: CAAAGAATGCCCTGGGTAAGCAATTCAAGAAATTGTTTAGCATGAATGATgtgagtatgc ... tgggtttcagGTTAAGCTTCACTTTACAGATGGTGCACTTAGAATAATTGCCGAAAAGGCG
EST: CAAAGAATGCCCTGGGTAAGCAATTCAAGAAATTGTTTAGCATGAATGAT GTTAAGCTTC-CTTTACAGATGGTGCACTTAGAATAATTGCCGAAAAGGCGEST: gi|211488133|gb|FL062510.1|FL062510
genomic: CAAAGAATGCCCTGGGTAAGCAATTCAAGAAATTGTTTAGCATGAATGATgtgagtatgc ... tgggtttcagGTTAAGCTTCACTTTACAGATGGTGCACTTAGAATAATTGCCGAAAAGGCG
EST: ATTCAAGAAATTGTTTAGCATGAATGAT GTTAAGCTTCACTTTACAGATGGTGCACTTAGAATAATTGCCGAAAAGGCGEST: gi|110208747|gb|EC890644.1|EC890644
genomic: ATTCAAGAAATTGTTTAGCATGAATGATgtgagtatgc ... tgggtttcagGTTAAGCTTCACTTTACAGATGGTGCACTTAGAATAATTGCCGAAAAGGCG
EST: GGGTAAGCAATTCAAGAAATTGTTTAGCATGAAAGGAT GTTAAGCTTCACTTTCCAGATGGTGCACTTAGAATAAATTGCCGAAAAGG
genomic: GGGTAAGCAATTCAAGAAATTGTTTAGCATG-AATGATgtgagtatgc ... tgggtttcagGTTAAGCTTCACTTTACAGATGGTGCACTTAGAAT-AATTGCCGAAAAGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTCTCACTGAGCCAAAGAATGCCCTGGGTAAGCAATTCAAGAAATTGTTTAGCATGAATGATgtgagtatgcttaccatgaaaacatgcagaaattagtatctccctagtgtctcaacttggctcagcattgggtttcag
- - - - - - - AAAGAA
- - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - AAGAAA