Sequence
atgc intronic sequence ATGC exonic sequenceGGTGCTTCAATGCTACTCCTAGCATTGTCCTTCACCTGGAAAGCTCTGGCACCTTATTCTGGTATTCTTGCTGTTGTTGGCACTGTTCTgtaagttgttaatgattcatcttgtttggtctttgctgattctatttaaatgtataacttgaatgtttgacataactggagtatttgtgcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G098011_T01 (Zea mays), 5'ss of exon 12
lower sequence: LOC_Os01g04190.3 (Oryza sativa), 5'ss of exon 12
GGTGCTTCAATGCTACTCCTAGCATTGTCCTTCACCTGGAAAGCTCTGGCACCTTATTCTGGTATTCTTGCTGTTGTTGGCACTGTTCTgtaagttgttaatgattcatcttgtttgg--tctttgctgattctatttaaatgtataacttgaatgtttgacataactggagtatttgtgcag
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GCTGCCTCAATGTTACTTCTATCATTGTCCTTCACGTGGAAGGCTTTGGCACCTTATTCAGGCCCTCTTGCTGTTGCTGGCACTGTTTTgtaagtggtttgtcatacgctttagtcaggccttttgctgattgtcattg------ttaactgttaatataacttgaatataat-tttatttag
upper sequence: GRMZM2G098011_T01 (Zea mays), 5'ss of exon 12
lower sequence: AT5G16150.1 (Arabidopsis thaliana), 5'ss of exon 12
GGTGCTTCAATGCTACTCCTAGCATTGTCCTTCACCTGGAAAGCTCTGGCACCTTATTCTGGTATTCTTGCTGTTGTTGGCACTGTTCTgtaagttgttaatgattcatcttgtttggtctttgctgattctatttaaatgtataacttgaatgtttgacataactggagtatttgtgcag
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GCTTTGTCAATGCTGTTACTCTCCTTGTCCTTCACATGGAAGGCTCTTGCTGCCTATTCTGGAACCCTTGCCGTTGTTGGAACTGTTCTgtaagtcaat-----ctcctcttaacacttccttatagtctctctgta----taggacttgactgactcttatgctcggttgtttaaatcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|32907066|gb|CF011879.1|CF011879EST: AAAGCTCTGGCACCTTATTCTGGTACTCTTGCTGTTGTTGGCACTGTTCT GTATGTGCTGTCTTTTGCTCTAGGAGCTGGCCCTGTTCCTGCCCTGCTTCT
genomic: AAAGCTCTGGCACCTTATTCTGGTATTCTTGCTGTTGTTGGCACTGTTCTgtaagttgtt ... atttgtgcagGTATGTGCTGTCTTTTGCTCTAGGAGCTGGTCCTGTTCCTGCCCTGCTTCT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GGTGCTTCAATGCTACTCCTAGCATTGTCCTTCACCTGGAAAGCTCTGGCACCTTATTCTGGTATTCTTGCTGTTGTTGGCACTGTTCTgtaagttgttaatgattcatcttgtttggtctttgctgattctatttaaatgtataacttgaatgtttgacataactggagtatttgtgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT