Sequence
atgc intronic sequence ATGC exonic sequenceGTACGTACATAGTTACCAAAGTTATCTGTGGAATCATGCTGCCAGTATGAGAGTGGAAAAGTATGgttagtttcttaccttctactaaaagaattaatgaaatcattacatggtttgatatttgtgaattaatgtatactattgcttaagttggttacctttgaacggatgtattagtctagcaaacaattttgtccacttttcattttctgactagtaattggcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G096553_T02 (Zea mays), 5'ss of exon 12
lower sequence: LOC_Os05g43374.1 (Oryza sativa), 5'ss of exon 8
GTACGTACATAGTTACCAAAGTTATCTGTGGAATCATGCTGCCAGTATGAGAGTGGAAAAGTATGgttagtttcttaccttctactaaa-------agaattaatgaaatcattacatggtttgatatttgtgaattaatgtatactattgcttaagttggtta--cctttgaacggatgta--ttagtctagcaaacaattttgtccacttttcatttt---ctgactag--taattggcag
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GTACGTTCATAGTTACCAAAGTTACCTCTGGAACCATGCTGCCAGTGCCAGAGTTGAAAAATATGgtcagtgcacttcatccttctacagctactcagttttagttgaatcatgatgcagtttgataattttctgataacggctaaccttgacctttttcttcaggcgtgttaccttttgtagttttatatggtgaacttctcttttcccattcctccttatgctaactggtgtacttgacag
upper sequence: GRMZM2G096553_T02 (Zea mays), 5'ss of exon 12
lower sequence: GLYMA03G40600.1 (Glycine max), 5'ss of exon 13
GTACGTACATAGTTACCAAAGTTATCTGTGGAATCATGCTGCCAGTATGAGAGTGGAAAAGTATGgttagtt---------------------------tcttaccttct-actaaaagaattaatgaaatcattacatggtttgat------atttgtgaattaatgtatactattgcttaagttggttacctttgaacggatgtattagtctagcaaacaattttgtccacttttcattttctgactagtaattggcag
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GTATGTTCATAGTTACCAAAGCTATTTGTGGAACCATGCTGCAAGTAAGAGGGTGCAAAAATATGgtaagttgtgatttgtaataaacttctagatttgtcttactttctcaggcaatgaacttctaatgtcac-acctgatttcctgaatgcatttgatacttaatccatacaatccttaccatgaattatcattattatgatacttgaagtcaaaatattcatttattaaatcgaaagtgatt--ctactgtgtggcag
upper sequence: GRMZM2G096553_T02 (Zea mays), 5'ss of exon 12
lower sequence: GLYMA19G43270.1 (Glycine max), 5'ss of exon 13
GTACGTACATAGTTACCAAAGTTATCTGTGGAATCATGCTGCCAGTATGAGAGTGGAAAAGTATGgttagtttcttaccttctactaaaagaattaatgaaatcattacatggtttgatatttgtgaattaatgtatactattgcttaagttggttacctttgaacggatgtattagtctagcaaacaattttgtccacttttcattttctgactagta----attggcag--------------------------------------------
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GTATGTTCATAGTTACCAAAGCTATTTATGGAACCATGCTGCAAGTAAGAGGGTGCAAAAATATGgtaagttg--tgatttgtaataaacttctagat-------ttgtcttgctt--tctcaggcaatgaacttctaatgtcacacctcctgatttcat--gaatgcatttgataggttgataatcgatacaatccttaccgtgaattatcattattatgatacttgaagtcaaaatattcattattgattaaatcgattctactgtgtggcag
upper sequence: GRMZM2G096553_T02 (Zea mays), 5'ss of exon 12
lower sequence: Vv14s0030g01850.t01 (Vitis vinifera), 5'ss of exon 8
GTACGTACATAGTTACCAAAGTTATCTGTGGAATCATGCTGCCAGTATGAGAGTGGAAAAGTATGgttagtttcttaccttctactaaaagaattaatgaaatcattacatggtttgatatttgtgaattaatgt-atactattgcttaagttggttacctttgaacggatgtattagtctagcaaacaattttgtccacttttcattttctgactagtaattggcag
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GTATGTACATAGTTACCAAAGCTATCTGTGGAACCATGCAGCTAGTATGAGAGTGCAAAACTATGgt--atgacgtcatttc---------agttactg---ttagtacaagatatatgataggtgtattactgttgtggtctagtccaaacttgatccctgctatttgag--aataaccatgtg--tgatttt-tctgttgttcaaccccatggcag----------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|31353291|gb|CD437648.1|CD437648EST: CCAAAGTTATCTGTGGAATCATGCTGCCAGTATGAGAGTGGAAAAGTATG GCATCTCACAGGTTGTAGAACGTGACTT
genomic: CCAAAGTTATCTGTGGAATCATGCTGCCAGTATGAGAGTGGAAAAGTATGgttagtttct ... taattggcagGCATCTCACAGGTTGTAGAAGGTGACTT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTACGTACATAGTTACCAAAGTTATCTGTGGAATCATGCTGCCAGTATGAGAGTGGAAAAGTATGgttagtttcttaccttctactaaaagaattaatgaaatcattacatggtttgatatttgtgaattaatgtatactattgcttaagttggttacctttgaacggatgtattagtctagcaaacaattttgtccacttttcattttctgactagtaattggcag
- - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA