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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCATTTGGATCTGCACTGGAATTTGTTTGGTCATCAGAAGGAGAATATGCAATTAGGGAAAGTACATCAAGAATAAAGATTTTCAGTAAATCATTTCAGgtattctagtttagtttattgtttctctctctatcagatgcaagtttctcatttcttccataattacgtaaaccttacctctggtttggcatctgtaaac...

Basic information

species Zea mays
transcript GRMZM2G095348_T03
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G095348_T03 (Zea mays), 5'ss of exon 12
lower sequence: LOC_Os06g05180.2 (Oryza sativa), 5'ss of exon 12
GTCATTTGGATCTGCACTGGAATTTGTTTGGTCATCAGAAGGAGAATATGCAATTAGGGAAAGTACATCAAGAATAAAGATTTTCAGTAAATCATTTCAGgtatt-ctagtttagtttattgtttctctctctatcagatgcaagtttctcatt-tcttccataattacgtaaaccttacctctggtttggcatctgtaaac-
|||||||||||||||| |||| ||||||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||||||||||||||||||| |  |     | | || | |  | ||  | ||| |  |  |    |   | | |  |   | ||| | | || |    ||||||    | ||     | | 
GTCATTTGGATCTGCATTGGAGTTTGTTTGGTCATCAGAAGGAGAGTATGCTATCAGGGAAAGTACATCAAGAATAAAGATTTTCAGTAAATCATTTCAGgtttggcccacattgattgtagcctttccttttatgaatttgatcagtaaaactgtagtgtttcatttcttcaatcaccactctgg---agaatgcaccatct

upper sequence: GRMZM2G095348_T03 (Zea mays), 5'ss of exon 12
lower sequence: GLYMA08G22140.1 (Glycine max), 5'ss of exon 12
GTCATTTGGATCTGCACTGGAATTTGTTTGGTCATCAGAAGGAGAATATGCAATTAGGGAAAGTACATCAAGAATAAAGATTTTCAGTAAATCATTTCAGgtattctagtttagtttattgtttctctctctatcagatgcaagtttctcatttcttccataattacgtaaacct-tacctctggtttggcatctgtaaac---
 |||||||| || |||||||||||||||||||| ||||| || || |||||  | || ||||||||||| |   | || |||||||| |||   || |||||  |   | ||   ||   ||| ||||    ||   || |   | ||| ||  |     | ||   |  |||||  |  |||   |       |  ||     
ATCATTTGGTTCAGCACTGGAATTTGTTTGGTCTTCAGATGGGGAGTATGCTGTAAGAGAAAGTACATCGAAGGTTAAAATTTTCAGCAAAAATTTCCAGgttgt---gcttcactttcagttactcttatcattttatactt-tgtcttatgacgaaagtgatggtgacaacctacaattctaaataatttgttaaaaggata

upper sequence: GRMZM2G095348_T03 (Zea mays), 5'ss of exon 12
lower sequence: GLYMA15G01680.1 (Glycine max), 5'ss of exon 12
GTCATTTGGATCTGCACTGGAATTTGTTTGGTCATCAGAAGGAGAATATGCAATTAGGGAAAGTACATCAAGAATAAAGATTTTCAGTAAATCATTTCAGgt--attctagtttagtttattgtttctctctcta-tcagatgcaagtttctcatttcttccataattacgtaaaccttacctctggtttggcatctgtaaac
||||||||| || |||||||||||||||||||| || || |||||||||||  | || |||||||||||||  || || |||||||| |||   || |||||   | ||  ||||     ||  ||  ||||||| ||   |||||   |||  ||   |   |||| |   ||    | | |    |||   |   | ||| 
GTCATTTGGTTCAGCACTGGAATTTGTTTGGTCTTCTGAGGGAGAATATGCTGTCAGAGAAAGTACATCAAAGATTAAAATTTTCAGCAAAAATTTCCAGgtttgtacttttttaaaaactttgtttcctctctaatctcgtgcaa---tcttgttctgtgtgtaatgaaccaacaagttcttgctatttcttaaaaggaaaa

upper sequence: GRMZM2G095348_T03 (Zea mays), 5'ss of exon 12
lower sequence: GLYMA13G43680.2 (Glycine max), 5'ss of exon 12
GTCATTTGGATCTGCACTGGAATTTGTTTGGTCATCAGAAGGAGAATATGCAATTAGGGAAAGTACATCAAGAATAAAGATTTTCAGTAAATCATTTCAGgtattctagtttagtttattgtttctctctctatcagatgcaagtt-tctcatttcttccataattacgtaaaccttacctctggtttggcatctgtaaac
||||||||| || |||||||||||||||||||| || || |||||||||||  | || |||||||||||||  || || |||||||| |||   || ||||| || || |||  ||||   ||  | ||      |       ||  |||  ||  ||   |||| |   ||    | | |    |||   |   | ||| 
GTCATTTGGTTCAGCACTGGAATTTGTTTGGTCTTCTGAGGGAGAATATGCTGTCAGAGAAAGTACATCAAAGATTAAAATTTTCAGCAAAAATTTCCAGgt-ttgtacttttttttaaacttcatttcctctctaatcttgtgtgatcttgttctttgtgtaatgaaccaacaagttcttgctatttcttaaaaggaaaa

upper sequence: GRMZM2G095348_T03 (Zea mays), 5'ss of exon 12
lower sequence: AT1G52360.2 (Arabidopsis thaliana), 5'ss of exon 12
GTCATTTGGATCTGCACTGGAATTTGTTTGGTCATCAGAAGGAGAATATGCAATTAGGGAAAGTACATCAAGAATAAAGATTTTCAGTAAATCATTTCAGgtattctagtttagtttattgtttctct------ctctatcagatgcaa-gtttctcatttcttccataattacgtaaaccttacctctggtttggcatctgtaaac----------------------------
||||||||| |||| ||||||||||||||||||||| || || || | |||  |||| |||||  ||||||  || || || || || |||   || ||||| |||||  |   ||| |   |  |||       ||| |   |  |    | | |  ||  |   |  ||||   | ||    | |   | | |  || |    |                             
GTCATTTGGTTCTGGACTGGAATTTGTTTGGTCATCCGAGGGGGAGTGTGCGGTTAGAGAAAGCTCATCAAAGATTAAAATATTTAGCAAAAATTTCCAGgt-ttctaaatctttttctctctgatctaagccgttctgttcaaccctgtatctatggttgttggaagtattattgatactggtcatggagatagctatattcggatctggctcattcagaaaatacattttcag

upper sequence: GRMZM2G095348_T03 (Zea mays), 5'ss of exon 12
lower sequence: AT3G15980.2 (Arabidopsis thaliana), 5'ss of exon 12
GTCATTTGGATCTGCACTGGAATTTGTTTGGTCATCAGAAGGAGAATATGCAATTAGGGAAAGTACATCAAGAATAAAGATTTTCAGTAAATCATTTCAGgtattctagtttagtt-tattgtttctctctctatcagatgcaagttt--ctcatttcttccataattacgtaaaccttacctctggtttggcatctgtaaac-------------------------------
 || ||||| ||||  |||||||||||||||||||| || || |||| |||  |||| |||||  ||||||  |||||||| |||||||||   || ||||| | ||| | |  || |    || |||   ||||    |   ||| |   ||     ||  | || |     |  ||| |    |     ||   |     |                               
ATCTTTTGGGTCTGGCCTGGAATTTGTTTGGTCATCTGAGGGGGAATGTGCGGTTAGAGAAAGCTCATCAAAGATAAAGATATTCAGTAAAAATTTCCAGgtttgctattctcattatggccttactcatactattttgttggagtatgattctagggttgaagaaattgcagatgcttgcaatagagacagctattactggcttattatattaataaaaggtggtgttttcag

upper sequence: GRMZM2G095348_T03 (Zea mays), 5'ss of exon 12
lower sequence: Vv09s0002g04810.t01 (Vitis vinifera), 5'ss of exon 12
GTCATTTGGATCTGCACTGGAATTTGTTTGGTCATCAGAAGGAGAATATGCAATTAGGGAAAGTACATCAAGAATAAAGATTTTCAGTAAATCATTTCAGgtattctagtttagtttattgtttctctctctatcagatgcaagtttctcatttcttccataattacgtaaacct-tacctctggtttggcatctgtaaac---
||| ||||| || ||| |||||||||| ||||||||||| || ||||||||  | || |||||||||||||   | ||||||||||||||    || ||||| |    ||    |   ||||||||||||  || |||   |  ||          |  |||  ||  |  |  | |   | ||  |  ||  ||| ||||   
GTCTTTTGGTTCGGCATTGGAATTTGTATGGTCATCAGATGGTGAATATGCTGTCAGAGAAAGTACATCAAAGGTTAAGATTTTCAGTAAGAATTTCCAGgtttgt--gtcccctcctttgtttctctctg-atgaga-atagattaggtgcaatatatatatatatatgcatgtgtgtgtgtgtgtgtgctgctgaaaacatt

upper sequence: GRMZM2G095348_T03 (Zea mays), 5'ss of exon 12
lower sequence: Vv11s0016g04180.t01 (Vitis vinifera), 5'ss of exon 12
GTCATTTGGATCTGCACTGGAATTTGTTTGGTCATCAGAAGGAGAATATGCAATTAGGGAAAGTACATCAAGAATAAAGATTTTCAGTAAATCATTTCAGgt----attctagtttagtttattgtttctctctctatcagatgcaagtttctcatttcttccataattacgtaaaccttacctctggtttggcatctgtaaac---
 |||||||| || || ||||||||||||||||||||||| | |||||||||  | ||||||||||||||||| || ||||||||||| ||| |||| |||||    || ||     ||||||   | || |    |||  ||||   | || ||  | |   || ||||| | ||  |||  || | |||    |  |||  |    
ATCATTTGGCTCAGCGCTGGAATTTGTTTGGTCATCAGATGCAGAATATGCTGTGAGGGAAAGTACATCAAGGATTAAGATTTTCAGCAAAACATTCCAGgttttgatcctttcaaagtttagattctcacgacttatt-gatgggggcttttc--tccaagca-aatta-gcaatgctt--cttttgttgcaaagttgtttatctt

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32806679|gb|CD958913.1|CD958913
EST:     CAATTAGGGAAAGTACATCAAGAATAAAGATTTTCAGTAAATCATTTCAG                         GAGAAGAAAACTATCCGCCCTTCATTTTCAGCAGAGCGTATTTTTGGTGGG
genomic: CAATTAGGGAAAGTACATCAAGAATAAAGATTTTCAGTAAATCATTTCAGgtattctagt ... gatttttcagGAGAAGAAAACTATCCGCCCTTCATTTTCAGCAGAGCGTATTTTTGGTGGG