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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTTGGTGGGGTATTGTTGGCAATGTGTTCTAGTGATTTCATCTGCTTTTATGACTGGGTTGATTGTAGACTAATACGCCGAATCGATGTGAATGTTAAGgtgaatcaagtattattttttcttgggtggaaattttgtatgtaaaatgtatgagtttactattaaccttttctttatcatgcatttatag

Basic information

species Zea mays
transcript GRMZM2G095348_T02
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G095348_T02 (Zea mays), 5'ss of exon 12
lower sequence: LOC_Os06g05180.2 (Oryza sativa), 5'ss of exon 13
TTTTGGTGGGGTATTGTTGGCAATGTGTTCTAGTGATTTCATCTGCTTTTATGACTGGGTTGATTGTAGACTAATACGCCGAATCGATGTGAATGTTAAGgtgaatcaagtattattttttcttgggtggaaattttgtatgtaaaatgtatgagtttactattaaccttttctttatca-tgcatttatag
|||||||||  |||| ||||| |||||||| ||||||||||| |||||||||||||||| ||| ||||||||||||||||| || ||||||||||| || |||| |||| |||||| | ||  |   |  | |||   ||  |  || | ||     ||||   |    |   ||| ||| || |||| |||
TTTTGGTGGAATATTATTGGCGATGTGTTCCAGTGATTTCATTTGCTTTTATGACTGGGCTGACTGTAGACTAATACGCCGCATTGATGTGAATGTCAAAgtgagtcaaatattatctattgatatttatagattg-atacttttaacgaattt-catactgaaataactagttttgtcactgtatttttag

upper sequence: GRMZM2G095348_T02 (Zea mays), 5'ss of exon 12
lower sequence: GLYMA08G22140.1 (Glycine max), 5'ss of exon 13
TTTTGGTGGGGTATTGTTGGCAATGTGTTCTAGTGATTTCATCTGCTTTTATGACTGGGTTGATTGTAGACTAATACGCCGAATCGATGTGAATGTTAAGgtgaat-caagtattattttttcttgggtggaaattttg---tatgtaaaatgtatgagtttactattaaccttttctt-tatcatgcatttatag
 ||||| ||     | ||||||||||| || | |||||||||||||||||| || |||||||| |||||  | || || || || ||||| |||||||| || | | |  | || |  |    |  | |      |||    | |    | ||| |    ||  | ||||  ||||||| | |||           
ATTTGGCGGCACTGTATTGGCAATGTGCTCAAATGATTTCATCTGCTTTTACGATTGGGTTGAGTGTAGGTTGATTCGTCGTATTGATGTTAATGTTAAAgtaagtgcttgcatgaggtggcatcagctttctgcttttatttcttcttactgtttcttatttttgttaaatttttcttgtgtcag----------

upper sequence: GRMZM2G095348_T02 (Zea mays), 5'ss of exon 12
lower sequence: GLYMA07G03890.2 (Glycine max), 5'ss of exon 2
TTTTGGTGGGGTATTGTTGGCAATGTGTTCTAGTGATTTCATCTGCTTTTATGACTGGGTTGATTGTAGACTAATACGCCGAATCGATGTGAATGTTAAGgtgaat-caagtattattttttcttgggtggaaattttgtatgtaaaatgtatga--gtttactattaaccttttctttatcatgcatttatag
 ||||||||     | ||||||||||| || | ||||||||||||||||||||| |||| ||| || ||  | || || || || ||||| |||||||| || | | |  | || |  |    |  | |     || ||  | ||     | | |  ||||  | ||||  || |    ||  |    |   ||
ATTTGGTGGCACTGTATTGGCAATGTGCTCAAATGATTTCATCTGCTTTTATGATTGGGCTGAATGCAGGTTGATTCGTCGTATTGATGTTAATGTTAAAgtaagtgcttgcatgaggtgacatcagct-----ttctgcttttatttcttcttactgtttcttgttaattttgttaaaattttcttgtgtcag

upper sequence: GRMZM2G095348_T02 (Zea mays), 5'ss of exon 12
lower sequence: GLYMA13G43680.2 (Glycine max), 5'ss of exon 13
TTTTGGTGGGGTATTGTTGGCAATGTGTTCTAGTGATTTCATCTGCTTTTATGACTGGGTTGATTGTAGACTAATACGCCGAATCGATGTGAATGTTAAGgtgaatcaagt-attattttttcttgggtgga--aattttgtatgtaaaatgtatgagtttactattaaccttttctttatcatgcatttatag
 ||||||||     |  |||| ||||| || |  ||||||||||||||||||||||||| ||| || ||  | ||    || || ||||| ||||| || || | |    | ||||  |    ||  ||       | || |   |   ||  ||  ||||| ||| |   | || || ||| ||  |      
ATTTGGTGGCACTCTACTGGCGATGTGCTCCAACGATTTCATCTGCTTTTATGACTGGGCTGAATGCAGGTTGATCTATCGCATTGATGTCAATGTGAAAgtaagtactttgattaggtgacatttagttatctgctcttttccttcttattcatt-gtttaatataattttgttattaatcttgtgtcag---

upper sequence: GRMZM2G095348_T02 (Zea mays), 5'ss of exon 12
lower sequence: GLYMA15G01680.1 (Glycine max), 5'ss of exon 13
TTTTGGTGGGGTATTGTTGGCAATGTGTTCTAGTGATTTCATCTGCTTTTATGACTGGGTTGATTGTAGACTAATACGCCGAATCGATGTGAATGTTAAGgtgaatcaagt-attattttttcttgggtggaaattttgtatgtaaaatgtatga-gtttactattaaccttttctttatcatgcatttatag
 || |||||    ||  |||| ||||| || |  ||||||||||||||||||||||||| ||| || ||  | ||    || || ||||| ||||| || || | |    | ||||  |    |   ||       |  | |      | |  |  ||||| | | |   | || |||||| ||  |      
ATTCGGTGGCACTTTACTGGCGATGTGCTCCAACGATTTCATCTGCTTTTATGACTGGGCTGAATGCAGGTTGATCTATCGCATTGATGTCAATGTGAAAgtaagtactttgattaggtgacatctagttatctgctcttttccttcttattcgttgtttaatttaattttgttatttatcttgtgtcag---

upper sequence: GRMZM2G095348_T02 (Zea mays), 5'ss of exon 12
lower sequence: AT3G15980.2 (Arabidopsis thaliana), 5'ss of exon 13
TTTTGGTGGGGTATTGTTGGCAATGTGTTCTAGTGATTTCATCTGCTTTTATGACTGGGTTGATTGTAGACTAATACGCCGAATCGATGTGAATGTTAAGgtgaatcaagtattattttttcttgggtggaaattttgtatgtaaaatgtat----gagtttactatta-accttttctttatcatgcatttatag----------------------------------------------
|||||| ||    ||||| ||||||||||| | ||||||||||||||| ||||| ||||  || || || || || |  | ||| ||||| |  || |||||  ||| | |    || | |||   |||  || || | ||  |  |  | |     | | |    ||| |  || | || |      | || |                                                
TTTTGGAGGAACCTTGTTAGCAATGTGTTCGAATGATTTCATCTGCTTCTATGATTGGGCCGAATGCAGGCTGATTCAACAAATTGATGTCACCGTAAAGgt--atccaattaccttgtctctgttgtgagaagttagcattcatcacttttttccaattctgtcgttacattttattttcagttgaaagttgtcccaattagtgtctttactaactctttactcccatgaaaaatttgcag

upper sequence: GRMZM2G095348_T02 (Zea mays), 5'ss of exon 12
lower sequence: AT1G52360.2 (Arabidopsis thaliana), 5'ss of exon 13
TTTTGGTGGGGTATTGTTGGCAATGTGTTCTAGTGATTTCATCTGCTTTTATGACTGGGTTGATTGTAGACTAATACGCCGAATCGATGTGAATGTTAAGgtgaatcaagta--ttatttt--ttcttgggtggaaattt---------tgtatgtaaaatgtatgagtttactattaaccttttctttatcatgcatttatag---------------------------------------------
 ||||| ||    ||||| || |||||||| ||||||||||||||||||||||| |||| ||| ||||| || || |  || || || || | ||| |||||    ||  ||  ||   |   ||  | |   ||| |||           ||| |  |||    ||   || ||| |     |||  | | | |  ||  | |                                             
CTTTGGAGGAACCTTGTTAGCTATGTGTTCAAGTGATTTCATCTGCTTTTATGATTGGGCTGAATGTAGGCTGATTCAACGTATTGACGTCACTGTAAAGgtatcccagttaacttggctcagtttattgtaagaagtttacttcaagacatatttggaatagtggaaactaatatcattgccttcagtttgaggttttcctcgtttgtttcttctctaatttgtagtgttgctacataacgtttgcag