1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
CGGGAGATTGAACTCAGCAAGCAACACCATGCCAGCGACTTGCAAGAGAAAAATAGACTTTCACGGATGTTGGAGCACAAGgttgtatgctattttatgtctttgttaatagtctctactacagtgcagttggctcctgtttgttatatattcaacctgtgatgatatacagagaatgcct...
species | Zea mays |
transcript | GRMZM2G093050_T01 |
intron # | 12 |
splice site | 5' |
intron type | U2 |
EST: CCAGCGACTTGCAAGAGAAAAATAGACTTTCACGGATGTTGGAGCACAAG AATGCTTTACAGGAGAGAATCATCCAAGAACGTGCAGCTGAGTTTGGCCGTEST: gi|20803164|gb|BQ294214.1|BQ294214
genomic: CCAGCGACTTGCAAGAGAAAAATAGACTTTCACGGATGTTGGAGCACAAGgttgtatgct ... gccgttgcagAATGCTTTACAGGAGAGAATCATCCAAGAACGTGCAGCTGAGTTTGGCCGT
EST: CCAGCGACTTGCAAGAGAAAAATAGACTTTCACGGATGTTGGAGCACAAG AATGCTTTACAGGAGAGAATCATCCAAGAACGTGCAGCTGAGTTTGGCCGTEST: gi|20508009|gb|BQ279859.1|BQ279859
genomic: CCAGCGACTTGCAAGAGAAAAATAGACTTTCACGGATGTTGGAGCACAAGgttgtatgct ... gccgttgcagAATGCTTTACAGGAGAGAATCATCCAAGAACGTGCAGCTGAGTTTGGCCGT
EST: CCAGCGACTTGCAAGAGAAAAATAGACTTTCACGGATGTTGGAGCACAAG AATGCTTTACAGGAGAGAATCATCCAAGAACGTGCAGCTGAGTTTGGCCGTEST: gi|213191761|gb|FM193894.1|FM193894
genomic: CCAGCGACTTGCAAGAGAAAAATAGACTTTCACGGATGTTGGAGCACAAGgttgtatgct ... gccgttgcagAATGCTTTACAGGAGAGAATCATCCAAGAACGTGCAGCTGAGTTTGGCCGT
EST: CCAGCGACTTGCAAGAGAAAAATAGACTTTCACGGATGTTGGAGCACAAG AATGCTTTACAGGAGAGAATCATCCAAGAACGTGCAGCTGAGTTTGGCCGTEST: gi|211384102|gb|FL133252.1|FL133252
genomic: CCAGCGACTTGCAAGAGAAAAATAGACTTTCACGGATGTTGGAGCACAAGgttgtatgct ... gccgttgcagAATGCTTTACAGGAGAGAATCATCCAAGAACGTGCAGCTGAGTTTGGCCGT
EST: CCAGCGACTTGCAAGAGAAAAATAGACTTTCACGGATGTTGGAGCACAAG AATGCTTTACAGGAGAGAATCATCCAAGAACGTGCAGCTGAGTTTGGCCGT
genomic: CCAGCGACTTGCAAGAGAAAAATAGACTTTCACGGATGTTGGAGCACAAGgttgtatgct ... gccgttgcagAATGCTTTACAGGAGAGAATCATCCAAGAACGTGCAGCTGAGTTTGGCCGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGGGAGATTGAACTCAGCAAGCAACACCATGCCAGCGACTTGCAAGAGAAAAATAGACTTTCACGGATGTTGGAGCACAAGgttgtatgctattttatgtctttgttaatagtctctactacagtgcagttggctcctgtttgttatatattcaacctgtgatgatatacagagaatgcct
- - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA