1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
TGGTGCCATGAAGCCTACTGCTGTATTTGTTCCTCTAGAAGAAATTCTAAAAAGTGGGAACTTCGAGCTTGTGACAAAGGAGATATTTGGTCCATTCCAGgtaatagatcctaggtgtaattatgttaccataatgaaaataatacaataatgcttgatagtcctggcattcctgacactagtattacaaatctcttcca...
species | Zea mays |
transcript | GRMZM2G090087_T02 |
intron # | 12 |
splice site | 5' |
intron type | U2 |
EST: AAAGTGGGAACTTCGAGCTTGTGACAAAGGAGATATTTGGTCCATTCCAG GTAGTCACAGAATACTCTGAGGATCAGCTTGAGTTGGTCTTAGAAGCCTGCEST: gi|211120257|gb|FL200678.1|FL200678
genomic: AAAGTGGGAACTTCGAGCTTGTGACAAAGGAGATATTTGGTCCATTCCAGgtaatagatc ... cacaacccagGTAGTCACAGAATACTCTGAGGATCAGCTTGAGTTGGTCTTAGAAGCCTGC
EST: AAAGTGGGAACTTCGAGCTTGTGACAAAGGAGATATTTGGTCCATTCCAG GTAGTCACAGAATACTCTGAGGATCAGCTTGAGTTGGTCTTAGAAGCCTGCEST: gi|67020094|gb|CO448843.1|CO448843
genomic: AAAGTGGGAACTTCGAGCTTGTGACAAAGGAGATATTTGGTCCATTCCAGgtaatagatc ... cacaacccagGTAGTCACAGAATACTCTGAGGATCAGCTTGAGTTGGTCTTAGAAGCCTGC
EST: AAAGTGGGAACTTCGAGCTTGTGACAAAGGAGATATTTGGTCCATTCCAG GTAGTCACAGAATACTCTGAGGACCAGCTTGAGTTGGTCTTAGAAGCCTGCEST: gi|6827469|gb|AW331112.1|AW331112
genomic: AAAGTGGGAACTTCGAGCTTGTGACAAAGGAGATATTTGGTCCATTCCAGgtaatagatc ... cacaacccagGTAGTCACAGAATACTCTGAGGATCAGCTTGAGTTGGTCTTAGAAGCCTGC
EST: AAAGTGGGAACTTCGAGCTTGTGACAAAGGAGATATTTGGTCCATTCCAG GTAGTCACAGAATACTCTGAGGACCAGCTTGAGTTGGTCTTAGAAGCCTGCEST: gi|18659076|gb|BM500142.1|BM500142
genomic: AAAGTGGGAACTTCGAGCTTGTGACAAAGGAGATATTTGGTCCATTCCAGgtaatagatc ... cacaacccagGTAGTCACAGAATACTCTGAGGATCAGCTTGAGTTGGTCTTAGAAGCCTGC
EST: AAAGTGGGAACTTCGAGCTTGTGACAAAGGAGATATTTGGTCCATTCCAG GTAGTCACAGAATACTCTGAGGATCAGCTTGAGTTGGTCTTAGAAGCCTGCEST: gi|67024223|gb|CO452972.1|CO452972
genomic: AAAGTGGGAACTTCGAGCTTGTGACAAAGGAGATATTTGGTCCATTCCAGgtaatagatc ... cacaacccagGTAGTCACAGAATACTCTGAGGATCAGCTTGAGTTGGTCTTAGAAGCCTGC
EST: AAAGTGGGAACTTCGAGCTTGTGACANAGGAGATATTTGGTCCATTCCAG GTAGTCACAGAATACTCTNGAG-ACCAGCTTGAGTTGGTCTTANAAGCCCTEST: gi|24773212|gb|CA408466.1|CA408466
genomic: AAAGTGGGAACTTCGAGCTTGTGACAAAGGAGATATTTGGTCCATTCCAGgtaatagatc ... cacaacccagGTAGTCACAGAATACTCT-GAGGATCAGCTTGAGTTGGTCTTAGAAGCC-T
EST: AAAGTGGGAACTTCGAGCTTGTGACAAAGGAGATATTTGGTCCATTCCAG GTAGTCACAGAATACTCTGAGGATCAGCTTGAGTTGGTCTTAGAAGCCTGCEST: gi|67023454|gb|CO452203.1|CO452203
genomic: AAAGTGGGAACTTCGAGCTTGTGACAAAGGAGATATTTGGTCCATTCCAGgtaatagatc ... cacaacccagGTAGTCACAGAATACTCTGAGGATCAGCTTGAGTTGGTCTTAGAAGCCTGC
EST: AAAGTGGGAACTTCGAGCTTGTGACAAAGGAGATATTTGGTCCATTCCAG GTAGTCACAGAATACTCTGAGGACCAGCTTGAGTTGGTCTTANAAGCCTGCEST: gi|33102441|gb|CF062401.1|CF062401
genomic: AAAGTGGGAACTTCGAGCTTGTGACAAAGGAGATATTTGGTCCATTCCAGgtaatagatc ... cacaacccagGTAGTCACAGAATACTCTGAGGATCAGCTTGAGTTGGTCTTAGAAGCCTGC
EST: AAAGTGGGAACTTCGAGCTTGTGACAAAGGAGATATTTGGTCCATTCCAG GTAGTCACAGAATACTCTGAGGATCAGCTTGAGTTGGTCTTAGAAGCCTGCEST: gi|211120258|gb|FL200679.1|FL200679
genomic: AAAGTGGGAACTTCGAGCTTGTGACAAAGGAGATATTTGGTCCATTCCAGgtaatagatc ... cacaacccagGTAGTCACAGAATACTCTGAGGATCAGCTTGAGTTGGTCTTAGAAGCCTGC
EST: AAAGTGGGAACTTCGAGCTTGTGACAAAGGAGATATTTGGTCCATTCCAG GTAGTCACGGAATACTCTGAGGATCAGCTTGAGTTGGTCTTAGAAGCCTGCEST: gi|211507628|gb|FL212141.1|FL212141
genomic: AAAGTGGGAACTTCGAGCTTGTGACAAAGGAGATATTTGGTCCATTCCAGgtaatagatc ... cacaacccagGTAGTCACAGAATACTCTGAGGATCAGCTTGAGTTGGTCTTAGAAGCCTGC
EST: AAAGTGGGAACTTCGAGCTTGTGACAAAGGAGATATTTGGTCCATTCCAG GTAGTCACAGAATACTCTGAGGATCAGCTTGAGTTGGTCTTAGAAGCCTGCEST: gi|67014372|gb|CO443121.1|CO443121
genomic: AAAGTGGGAACTTCGAGCTTGTGACAAAGGAGATATTTGGTCCATTCCAGgtaatagatc ... cacaacccagGTAGTCACAGAATACTCTGAGGATCAGCTTGAGTTGGTCTTAGAAGCCTGC
EST: GGAGAT-TTTGGTCCATTCCAG GTAGTCACAGAATCCTCTGAGGACCAGCTTGAGTTGGTCTTAGAAGCCTGCEST: gi|32847832|gb|CD987513.1|CD987513
genomic: GGAGATATTTGGTCCATTCCAGgtaatagatc ... cacaacccagGTAGTCACAGAATACTCTGAGGATCAGCTTGAGTTGGTCTTAGAAGCCTGC
EST: AAAGTGGGAACTTCGAGCTTGTGACAAAGGAGATATTTGGTCCATTCCAG GTAGTCACAGAATACTCCGAGGATCAGCTTGAGTTGGTCTTAGAAGCCTGCEST: gi|60349947|gb|DN216920.1|DN216920
genomic: AAAGTGGGAACTTCGAGCTTGTGACAAAGGAGATATTTGGTCCATTCCAGgtaatagatc ... cacaacccagGTAGTCACAGAATACTCTGAGGATCAGCTTGAGTTGGTCTTAGAAGCCTGC
EST: AAAGTGGGAACTTCGAGCTTGTGACAAAGGAGATATTTGGTCCATTCCAG GTAGTCACAGAATACTCTGAGGATCAGCTTGAGTTGGTCTTAGAAGCCTGCEST: gi|211342162|gb|FL434432.1|FL434432
genomic: AAAGTGGGAACTTCGAGCTTGTGACAAAGGAGATATTTGGTCCATTCCAGgtaatagatc ... cacaacccagGTAGTCACAGAATACTCTGAGGATCAGCTTGAGTTGGTCTTAGAAGCCTGC
EST: AAAGTGGGAACTTCGAGCTTGTGACAAAGGAGATATTTGGTCCATTCCAG GTAGTCACAGAATACTCTGAGGATCAGCTTGAGTTGGTCTTAGAAGCCTGC
genomic: AAAGTGGGAACTTCGAGCTTGTGACAAAGGAGATATTTGGTCCATTCCAGgtaatagatc ... cacaacccagGTAGTCACAGAATACTCTGAGGATCAGCTTGAGTTGGTCTTAGAAGCCTGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGGTGCCATGAAGCCTACTGCTGTATTTGTTCCTCTAGAAGAAATTCTAAAAAGTGGGAACTTCGAGCTTGTGACAAAGGAGATATTTGGTCCATTCCAGgtaatagatcctaggtgtaattatgttaccataatgaaaataatacaataatgcttgatagtcctggcattcctgacactagtattacaaatctcttcca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT