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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCCTTTCTAATGATAACTTCAAGTATGGTTACAATGCTGCTACTGGACAGTACGAGGACCTGATGGCTGCTGGTATCATTGACCCCACCAAGgtttgtggccctgtggcttccctatctgtctgcttgaattctagttggttggtcttgcaacttctgtaatcaatgcatgttcccctaccattgggcttca...

Basic information

species Zea mays
transcript GRMZM2G083716_T04
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G083716_T03 (Zea mays), 5'ss of exon 12
lower sequence: LOC_Os06g02380.1 (Oryza sativa), 5'ss of exon 13
GTCCTTTCTAATGATAACTTCAAGTATGGTTACAATGCTGCTACTGGACAGTACGAGGACCTGATGGCTGCTGGTATCATTGACCCCACCAAGgtttgtggc--cctgtggcttccctatctgtctgcttgaat-tctagttggttggtcttgcaacttctgtaatcaatgcatgttcccctaccattgggcttca
|| || ||||| ||||||||||||| ||||||||||||||| |||||||||||||||||  |||||||||||||||||||||||||||| ||||| ||| ||  ||  | | || || || | | ||| | ||  | ||| | | |||  |  | |  | | ||    |   |  ||     |   | || ||   
GTTCTCTCTAACGATAACTTCAAGTTTGGTTACAATGCTGCAACTGGACAGTACGAGGATTTGATGGCTGCTGGTATCATTGACCCCACTAAGgtctgttgctccccattgatttccgatatttttgcataaaaatttagattggtggattccctatattt-tagctgaaata-attatagcagtgt-ggactgtg

upper sequence: GRMZM2G083716_T03 (Zea mays), 5'ss of exon 12
lower sequence: Vv09s0002g03930.t01 (Vitis vinifera), 5'ss of exon 12
GTCCTTTCTAATGATAACTTCAAGTATGGTTACAATGCTGCTACTGGACAGTACGAGGACCTGATGGCTGCTGGTATCATTGACCCCACCAAGgtttgtggccctgtg-----gcttccctatctgtctgcttgaattctagttggttggtcttgcaacttctgtaatcaatgcatgttcccctaccattgggcttca
||  | || | ||| ||    || ||||||||||||||||| |||||| | ||||||||  |||||||||||||||| ||||| ||||| || ||  ||    ||  |     ||||    || |  ||||      | ||    || ||  ||  || |||     |  || |      ||  |||  | |      
GTGTTGTCCAGTGACAATCCAAAATATGGTTACAATGCTGCAACTGGAAAATACGAGGATTTGATGGCTGCTGGTATAATTGATCCCACGAAAgtaagtttttcttggatggtgctttgacatgtagctgcaaattatgtaacctgt-ggaattcaaatttcaagcctatatactcaactccagacccattgat----

upper sequence: GRMZM2G083716_T03 (Zea mays), 5'ss of exon 12
lower sequence: PP1S14_298V6.1 (Physcomitrella patens), 5'ss of exon 9
GTCCTTTCTAATGATAACTTCAAGTATGGTTACAATGCTGCTACTGGACAGTACGAGGACCTGATGGCTGCTGGTATCATTGACCCCACCAAGgtttgtggccctgtggcttccctatctgtctgcttgaattctagttggttggtcttgcaacttctgtaatcaatgcatgt-tcccctaccattgggcttca--------------------------------
||  |  | |||   |||      |  || |||||||| ||||| ||    ||||||||||| ||||||||||||||||| ||||| ||||||||   |||       ||     | |     |      | ||| |    ||   |||  ||   ||||||   ||   |   || | |    | | |   ||                                
GTGTTGGCGAATAGCAACCCATCCTTCGGCTACAATGCCGCTACAGGTGTCTACGAGGACCTCATGGCTGCTGGTATCATCGACCCTACCAAGgtacttggattcactgcggtggttttaacttcgagagaatcttgcactttcacctt-taatggctgtaagtgatttgtaaatctcgtggtgtggtggcgcagtattaagagtcttggataccatgttttgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110524823|gb|EE029007.1|EE029007
EST:     CTGGACAGTACGAGGACCTGATGGCTGCTGGTATCATTGANNNNNNNAAG                         GTGGTGAGATGCTGCTTGGAGCACGCCGCGTCGGTGGCCAAGACCTTCCTG
genomic: CTGGACAGTACGAGGACCTGATGGCTGCTGGTATCATTGACCCCACCAAGgtttgtggcc ... ctgtctgtagGTGGTGAGATGCTGCTTGGAGCACGCCGCGTCGGTGGCCAAGACCTTCCTG
EST: gi|78080917|gb|DV509329.1|DV509329
EST:     CTGGACAGTACGAGGACCTGATGGCTGCTGGTATCATTGACCCCACCAAG                         GTGGTGAGATGCTGCTTGGAGCACGCCGCGTCGGTGGCCAAGACCTTCCTG
genomic: CTGGACAGTACGAGGACCTGATGGCTGCTGGTATCATTGACCCCACCAAGgtttgtggcc ... ctgtctgtagGTGGTGAGATGCTGCTTGGAGCACGCCGCGTCGGTGGCCAAGACCTTCCTG
EST: gi|13515993|gb|BG518269.1|BG518269
EST:     CTGGACAGTACGAGGACCTGATGGCTGCTGGTATCATTGACCCCACCAAG                         GTGGTGAGATGCTGCTTGGAGCACGCCGCGTCGGTGGCCAAGACCTTCCTG
genomic: CTGGACAGTACGAGGACCTGATGGCTGCTGGTATCATTGACCCCACCAAGgtttgtggcc ... ctgtctgtagGTGGTGAGATGCTGCTTGGAGCACGCCGCGTCGGTGGCCAAGACCTTCCTG
EST: gi|148983128|gb|EE029059.2|EE029059
EST:     CTGGACAGTACGAGGACCTGATGGCTGCTGGTATCATTGANNNNNNNAAG                         GTGGTGAGATGCTGCTTGGAGCACGCCGCGTCGGTGGCCAAGACCTTCCTG
genomic: CTGGACAGTACGAGGACCTGATGGCTGCTGGTATCATTGACCCCACCAAGgtttgtggcc ... ctgtctgtagGTGGTGAGATGCTGCTTGGAGCACGCCGCGTCGGTGGCCAAGACCTTCCTG
EST: gi|211019215|gb|FL365163.1|FL365163
EST:     CTGGACAGTACGAGGACCTGATGGCTGCTGGTATCATTGACCCCACCAAG                         GTGGTGAGATGCTGCTTGGAGCACGCCGCGTCGGTGGCCAAGACCTTCCTG
genomic: CTGGACAGTACGAGGACCTGATGGCTGCTGGTATCATTGACCCCACCAAGgtttgtggcc ... ctgtctgtagGTGGTGAGATGCTGCTTGGAGCACGCCGCGTCGGTGGCCAAGACCTTCCTG
EST: gi|32928664|gb|CF033476.1|CF033476
EST:     ACGAGGACCTGATGGCTGCTGGTATCATTGACCCCACCAAG                         GTGGTGAGATGCTGCTTGGAGCACGCCGCGTCGGTGGCCAAGACCTTCCTG
genomic: ACGAGGACCTGATGGCTGCTGGTATCATTGACCCCACCAAGgtttgtggcc ... ctgtctgtagGTGGTGAGATGCTGCTTGGAGCACGCCGCGTCGGTGGCCAAGACCTTCCTG
EST: gi|4573295|gb|AI586854.1|AI586854
EST:     CTGGACAGTACGAGGACCTGATGGCTGCTGGTATCATTGACCCCACCAAG                         GTGGTGAGATGCTGCTTGGAGCACGCCGCGTCGGTGGCCAAGACCTTCCTG
genomic: CTGGACAGTACGAGGACCTGATGGCTGCTGGTATCATTGACCCCACCAAGgtttgtggcc ... ctgtctgtagGTGGTGAGATGCTGCTTGGAGCACGCCGCGTCGGTGGCCAAGACCTTCCTG
EST: gi|149099157|gb|EE185182.2|EE185182
EST:     CTGGACAGTACGAGGACCTGATGGCTGCTGGTATCATTGACCCCACCAAG                         GTGGTGAGATGCTGCTTGGAGCACGCCGCGTCGGTGGCCAAGACCTTCCTG
genomic: CTGGACAGTACGAGGACCTGATGGCTGCTGGTATCATTGACCCCACCAAGgtttgtggcc ... ctgtctgtagGTGGTGAGATGCTGCTTGGAGCACGCCGCGTCGGTGGCCAAGACCTTCCTG
EST: gi|32945093|gb|CF049912.1|CF049912
EST:     CTGGACAGTACGAGGACCTGATGGCTGCTGGTATCATTGACCCCACCAAG                         GTGGTGAGATGCTGCTTGGAGCACGCCGCGTCGGTGGCCAAGACCTTCCTG
genomic: CTGGACAGTACGAGGACCTGATGGCTGCTGGTATCATTGACCCCACCAAGgtttgtggcc ... ctgtctgtagGTGGTGAGATGCTGCTTGGAGCACGCCGCGTCGGTGGCCAAGACCTTCCTG
EST: gi|60343623|gb|DN210596.1|DN210596
EST:     CTGGACAGTACGAGGACCTGATGGCTGCTGGTATCATTGACCCCACCAAG                         GTGGTGAGATGCTGCTTGGAGCACGCCGCGTCGGTGGCCAAGACCTTCCTG
genomic: CTGGACAGTACGAGGACCTGATGGCTGCTGGTATCATTGACCCCACCAAGgtttgtggcc ... ctgtctgtagGTGGTGAGATGCTGCTTGGAGCACGCCGCGTCGGTGGCCAAGACCTTCCTG
EST: gi|32929769|gb|CF034581.1|CF034581
EST:     ACGAGGACCTGATGGCTGCTGGTATCATTGACCCCACCAAG                         GTGGTGAGATGCTGCTTGGAGCACGCCGCGTCGGTGGCCAAGACCTTCCTG
genomic: ACGAGGACCTGATGGCTGCTGGTATCATTGACCCCACCAAGgtttgtggcc ... ctgtctgtagGTGGTGAGATGCTGCTTGGAGCACGCCGCGTCGGTGGCCAAGACCTTCCTG
EST: gi|5069818|gb|AI737783.1|AI737783
EST:     CTGGACAGTACGAGGACCTGATGGCTGCTGGTATCATTGACCCCACCAAG                         GTGGTGAGATGCTGCTTGGAGCACGCCGCGTCGGTGGCCAAGACCTTCCTG
genomic: CTGGACAGTACGAGGACCTGATGGCTGCTGGTATCATTGACCCCACCAAGgtttgtggcc ... ctgtctgtagGTGGTGAGATGCTGCTTGGAGCACGCCGCGTCGGTGGCCAAGACCTTCCTG
EST: gi|32912989|gb|CF017801.1|CF017801
EST:     CTGGACAGTACGAGGACCTGATGGCTGCTGGTATCATTGACCCCACCAAG                         GTGGTGAGATGCTGCTTGGAGCACGCCGCGTCGGTGGCCAAGACCTTCCTG
genomic: CTGGACAGTACGAGGACCTGATGGCTGCTGGTATCATTGACCCCACCAAGgtttgtggcc ... ctgtctgtagGTGGTGAGATGCTGCTTGGAGCACGCCGCGTCGGTGGCCAAGACCTTCCTG
EST: gi|60342862|gb|DN209835.1|DN209835
EST:     CTGGACAGTACGAGGACCTGATGGCTGCTGGTATCATTGACCCCACCAAG                         GTGGTGAGATGCTGCTTGGAGCACGCCGCGTCGGTGGCCAAGACCTTCCTG
genomic: CTGGACAGTACGAGGACCTGATGGCTGCTGGTATCATTGACCCCACCAAGgtttgtggcc ... ctgtctgtagGTGGTGAGATGCTGCTTGGAGCACGCCGCGTCGGTGGCCAAGACCTTCCTG
EST: gi|60395675|gb|DN228545.1|DN228545
EST:     CTGGACAGTACGAGGACCTGATGGCTGCTGGTATCATTGACCCCACCAAG                         GTGGTGAGATGCTGCTTGGAGCACGCCGCGTCGGTGGCCAAGACCTTCCTG
genomic: CTGGACAGTACGAGGACCTGATGGCTGCTGGTATCATTGACCCCACCAAGgtttgtggcc ... ctgtctgtagGTGGTGAGATGCTGCTTGGAGCACGCCGCGTCGGTGGCCAAGACCTTCCTG
EST: gi|211360073|gb|FL471663.1|FL471663
EST:     CTGGACAGTACGAGGACCTGATGGCTGCTGGTATCATTGACCCCACCAAG                         GTGGTGAGATGCTGCTTGGAGCACGCCGCGTCGGTGGCCAAGACCTTCCTG
genomic: CTGGACAGTACGAGGACCTGATGGCTGCTGGTATCATTGACCCCACCAAGgtttgtggcc ... ctgtctgtagGTGGTGAGATGCTGCTTGGAGCACGCCGCGTCGGTGGCCAAGACCTTCCTG
EST: gi|8368410|gb|BE051355.1|BE051355
EST:     CTGGACAGTACGAGGACCTGATGGCTGCTGGTATCATTGACCCCACCAAG                         GTGGTGAGATGCTGCTTGGAGCACGCCGCGTCGGTGGCCAAGACCTTCCTG
genomic: CTGGACAGTACGAGGACCTGATGGCTGCTGGTATCATTGACCCCACCAAGgtttgtggcc ... ctgtctgtagGTGGTGAGATGCTGCTTGGAGCACGCCGCGTCGGTGGCCAAGACCTTCCTG
EST: gi|5030570|gb|AI714764.1|AI714764
EST:     CTGGACAGTACGAGGACCTGATGGCTGCTGGTATCATTGACCCCACCAAG                         GTGGTGAGATGCTGCTTGGAGCACGCCGCGTCGGTGGCCAAGACCTTCCTG
genomic: CTGGACAGTACGAGGACCTGATGGCTGCTGGTATCATTGACCCCACCAAGgtttgtggcc ... ctgtctgtagGTGGTGAGATGCTGCTTGGAGCACGCCGCGTCGGTGGCCAAGACCTTCCTG
EST: gi|6601638|gb|AW256034.1|AW256034
EST:     CTGGACAGTACGAGGACCTGATGGCTGCTGGTATCATTGACCCCACCAAG                         GTGGTGAGATGCTGCTTGGAGCACGCCGCGTCGGTGGCCAAGACCTTCCTG
genomic: CTGGACAGTACGAGGACCTGATGGCTGCTGGTATCATTGACCCCACCAAGgtttgtggcc ... ctgtctgtagGTGGTGAGATGCTGCTTGGAGCACGCCGCGTCGGTGGCCAAGACCTTCCTG
EST: gi|60355768|gb|DN222741.1|DN222741
EST:     CTGGACAGTACGAGGACCTGATGGCTGCTGGTATCATTGACCCCACCAAG                         GTGGTGAGATGCTGCTTGGAGCACGCCGCGTCGGTGGCCAAGACCTTCCTG
genomic: CTGGACAGTACGAGGACCTGATGGCTGCTGGTATCATTGACCCCACCAAGgtttgtggcc ... ctgtctgtagGTGGTGAGATGCTGCTTGGAGCACGCCGCGTCGGTGGCCAAGACCTTCCTG
EST: gi|4804136|gb|AI666002.1|AI666002
EST:     CTGGACAGTACGAGGACCTGATGGCTGCTGGTATCATTGACCCCACCAAG                         GTGGTGAGATGCTGCTTGGAGCACGCCGCGTCGGTGGCCAAGACCTTCCTG
genomic: CTGGACAGTACGAGGACCTGATGGCTGCTGGTATCATTGACCCCACCAAGgtttgtggcc ... ctgtctgtagGTGGTGAGATGCTGCTTGGAGCACGCCGCGTCGGTGGCCAAGACCTTCCTG
EST: gi|6031526|gb|AW076428.1|AW076428
EST:     CTGGACAGTACGAGGACCTGATGGCTGCTGGTATCATTGACCCCACCAAG                         GTGGTGAGATGCTGCTTGGAGCACGCCGCGTCGGTGGCCAAGACCTTCCTG
genomic: CTGGACAGTACGAGGACCTGATGGCTGCTGGTATCATTGACCCCACCAAGgtttgtggcc ... ctgtctgtagGTGGTGAGATGCTGCTTGGAGCACGCCGCGTCGGTGGCCAAGACCTTCCTG
EST: gi|5761879|gb|AI966852.1|AI966852
EST:     CTGGACAGTACGAGGACCTGATGGCTGCTGGTATCATTGACCCCACCAAG                         GTGGTGAGATGCTGCTTGGAGCACGCCGCGTCGGTGGCCAAGACCTTCCTG
genomic: CTGGACAGTACGAGGACCTGATGGCTGCTGGTATCATTGACCCCACCAAGgtttgtggcc ... ctgtctgtagGTGGTGAGATGCTGCTTGGAGCACGCCGCGTCGGTGGCCAAGACCTTCCTG
EST: gi|211500916|gb|FL458285.1|FL458285
EST:     CTGGACAGTACGAGGACCTGATGGCTGCTGGTATCATTGACCCCACCAAG                         GTGGTGAGATGCTGCATGGAGCACGCCGCGTCGGTGGCCAAGACCTTCCTG
genomic: CTGGACAGTACGAGGACCTGATGGCTGCTGGTATCATTGACCCCACCAAGgtttgtggcc ... ctgtctgtagGTGGTGAGATGCTGCTTGGAGCACGCCGCGTCGGTGGCCAAGACCTTCCTG
EST: gi|211268071|gb|FL357474.1|FL357474
EST:     CTGGACAGTACGAGGACCTGATGGCTGCTGGTATCATTGACCCCACCAAG                         GTGGTGAGATGCTGCTTGGAGCACGCCGCGTCGGTGGCCAAGACCTTCCTG
genomic: CTGGACAGTACGAGGACCTGATGGCTGCTGGTATCATTGACCCCACCAAGgtttgtggcc ... ctgtctgtagGTGGTGAGATGCTGCTTGGAGCACGCCGCGTCGGTGGCCAAGACCTTCCTG
EST: gi|71764883|gb|DR962820.1|DR962820
EST:     CTGGACAGTACGAGGACCTGATGGCTGCTGGTATCATTGACCCCACCAAG                         GTGGTGAGATGCTGCTTGGAGCACGCCGCGTCGGTGGCCAAGACCTTCCTG
genomic: CTGGACAGTACGAGGACCTGATGGCTGCTGGTATCATTGACCCCACCAAGgtttgtggcc ... ctgtctgtagGTGGTGAGATGCTGCTTGGAGCACGCCGCGTCGGTGGCCAAGACCTTCCTG
EST: gi|211298346|gb|FL366289.1|FL366289
EST:     CTGGACAGTACGAGGACCTGATGGCTGCTGGTATCATTGACCCCACCAAG                         GTGGTGAGATGCTGCTTGGAGCACGCCGCGTCGGTGGCCAAGACCTTCCTG
genomic: CTGGACAGTACGAGGACCTGATGGCTGCTGGTATCATTGACCCCACCAAGgtttgtggcc ... ctgtctgtagGTGGTGAGATGCTGCTTGGAGCACGCCGCGTCGGTGGCCAAGACCTTCCTG
EST: gi|4609507|gb|AI600346.1|AI600346
EST:     CTGGACAGTACGAGGACCTGATGGCTGCTGGTATCATTGACCCCACCAAG                         GTGGTGAGATGCTGCTTGGAGCACGCCGCGTCGGTGGCCAAGACCTTCCTG
genomic: CTGGACAGTACGAGGACCTGATGGCTGCTGGTATCATTGACCCCACCAAGgtttgtggcc ... ctgtctgtagGTGGTGAGATGCTGCTTGGAGCACGCCGCGTCGGTGGCCAAGACCTTCCTG
EST: gi|32914512|gb|CF019324.1|CF019324
EST:     CTGGACAGTACGAGGACCTGATGGCTGCTGGTATCATTGACCCCACCAAG                         GTGGTGAGATGCTGCTTGGAGCACGCCGCGTCGGTGGCCAAGACCTTCCTG
genomic: CTGGACAGTACGAGGACCTGATGGCTGCTGGTATCATTGACCCCACCAAGgtttgtggcc ... ctgtctgtagGTGGTGAGATGCTGCTTGGAGCACGCCGCGTCGGTGGCCAAGACCTTCCTG
EST: gi|211197446|gb|FL310846.1|FL310846
EST:     CTGGACAGTACGAGGACCTGATGGCTGCTGGTATCATTGACCCCACCAAG                         GTGGTGAGATGCTGCTTGGAGCACGCCGCGTCGGTGGCCAAGACCTTCCTG
genomic: CTGGACAGTACGAGGACCTGATGGCTGCTGGTATCATTGACCCCACCAAGgtttgtggcc ... ctgtctgtagGTGGTGAGATGCTGCTTGGAGCACGCCGCGTCGGTGGCCAAGACCTTCCTG
EST: gi|148961769|gb|EE012546.2|EE012546
EST:     CTGGACAGTACGAGGACCTGATGGCTGCTGGTATCATTGACCCCACCAAG                         GTGGTGAGATGCTGCTTGGAGCACGCCGCGTCGGTGGCCAAGACCTTCCTG
genomic: CTGGACAGTACGAGGACCTGATGGCTGCTGGTATCATTGACCCCACCAAGgtttgtggcc ... ctgtctgtagGTGGTGAGATGCTGCTTGGAGCACGCCGCGTCGGTGGCCAAGACCTTCCTG
EST: gi|120480889|gb|EH211078.1|EH211078
EST:     CTGGACAGTACGAGGACCTGATGGCTGCTGGTATCATTGACCCCACCAAG                         GTGGTGAGATGCTGCTTGGAGCACGCCGCGTCGGTGGCCAAGACCTTCCTG
genomic: CTGGACAGTACGAGGACCTGATGGCTGCTGGTATCATTGACCCCACCAAGgtttgtggcc ... ctgtctgtagGTGGTGAGATGCTGCTTGGAGCACGCCGCGTCGGTGGCCAAGACCTTCCTG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 222

GTCCTTTCTAATGATAACTTCAAGTATGGTTACAATGCTGCTACTGGACAGTACGAGGACCTGATGGCTGCTGGTATCATTGACCCCACCAAGgtttgtggcc ... ctgtctgtagGTGGTGAGATGCTGCTTGGAGCACGCCGCGTCGGTGGCCAAGACCTTCCTGACATCAGATGTTGTGGTCGTCGATATCAAGGAGCCGGAGGCTGCACCTG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 662

GTCCTTTCTAATGATAACTTCAAGTATGGTTACAATGCTGCTACTGGACAGTACGAGGACCTGATGGCTGCTGGTATCATTGACCCCACCAAGgtttgtggcc ... ctgtctgtagGTGGTGAGATGCTGCTTGGAGCACGCCGCGTCGGTGGCCAAGACCTTCCTGACATCAGATGTTGTGGTCGTCGATATCAAGGAGCCGGAGGCTGCACCTG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 158

GTCCTTTCTAATGATAACTTCAAGTATGGTTACAATGCTGCTACTGGACAGTACGAGGACCTGATGGCTGCTGGTATCATTGACCCCACCAAGgtttgtggcc ... ctgtctgtagGTGGTGAGATGCTGCTTGGAGCACGCCGCGTCGGTGGCCAAGACCTTCCTGACATCAGATGTTGTGGTCGTCGATATCAAGGAGCCGGAGGCTGCACCTG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 393

GTCCTTTCTAATGATAACTTCAAGTATGGTTACAATGCTGCTACTGGACAGTACGAGGACCTGATGGCTGCTGGTATCATTGACCCCACCAAGgtttgtggcc ... ctgtctgtagGTGGTGAGATGCTGCTTGGAGCACGCCGCGTCGGTGGCCAAGACCTTCCTGACATCAGATGTTGTGGTCGTCGATATCAAGGAGCCGGAGGCTGCACCTG


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTCCTTTCTAATGATAACTTCAAGTATGGTTACAATGCTGCTACTGGACAGTACGAGGACCTGATGGCTGCTGGTATCATTGACCCCACCAAGgtttgtggccctgtggcttccctatctgtctgcttgaattctagttggttggtcttgcaacttctgtaatcaatgcatgttcccctaccattgggcttca

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cccctacc