Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   		22  
 5'  3'   		23  
 5'  3'   		24  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTATTTACATGGCAACAAACTCACTGGACATATACCACCAGAACTGGGGAACATGAGTAAACTTAGCTACCTgtaagttactgttaactaaataattgtgtgcggctattgtccgtaatcttaataagggtcaatattcgttccaccag

Basic information

species Zea mays
transcript GRMZM2G082855_T04
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G082855_T04 (Zea mays), 5'ss of exon 12
lower sequence: LOC_Os06g03970.1 (Oryza sativa), 5'ss of exon 12
CTATTTACATGGCAACAAACTCACTGGACATATACCACCAGAACTGGGGAACATGAGTAAACTTAGCTACCTgtaagttactgt----taactaaataattgtgtgcggctattgtccgtaatcttaataag--ggtcaatattcgttccac-cag
 ||||||||||| |||||||| ||||||   ||||| || || || |||||||||||||||||||||||||||||||| | | |    ||   | ||| |  |||||  |  |||      | |   |||||  | |||  | |  |||||  |||
ATATTTACATGGGAACAAACTTACTGGAGTCATACCGCCGGAGCTTGGGAACATGAGTAAACTTAGCTACCTgtaagtgattatatggtatgcagatattgttgtgctccagttggtgtggaacactataagatgttcagaaatttttccatgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|149079907|gb|EE168913.2|EE168913
EST:     ACTGGACATATACCACCAGAACTGGGGAACATGAGTAAACTTAGCTACCT                         GCAGCTGAATGACAATGAATTAGTGGGCACAATCCCAGCTGAGCTTGGCAA
genomic: ACTGGACATATACCACCAGAACTGGGGAACATGAGTAAACTTAGCTACCTgtaagttact ... gttccaccagGCAGCTGAATGACAATGAATTAGTGGGCACAATCCCAGCTGAGCTTGGCAA
EST: gi|148964982|gb|EC906062.2|EC906062
EST:     ACTGGACATATACCACCAGAACTGGGGAACATGAGTAAACTTAGCTACCT                         GCAGCTGAATGACAATGAATTAGTGGGCACAATCCCAGCTGAGCTTGGCAA
genomic: ACTGGACATATACCACCAGAACTGGGGAACATGAGTAAACTTAGCTACCTgtaagttact ... gttccaccagGCAGCTGAATGACAATGAATTAGTGGGCACAATCCCAGCTGAGCTTGGCAA
EST: gi|101383199|gb|EB813654.1|EB813654
EST:     ACTGGACATATACCACCAGAACTGGGGAACATGAGTAAACTTAGCTACCT                         GCAGCTGAATGACAATGAATTAGTGGGCACAATCCCAGCTGAGCTTGGCAA
genomic: ACTGGACATATACCACCAGAACTGGGGAACATGAGTAAACTTAGCTACCTgtaagttact ... gttccaccagGCAGCTGAATGACAATGAATTAGTGGGCACAATCCCAGCTGAGCTTGGCAA
EST: gi|148961185|gb|EE011900.2|EE011900
EST:     ACTGGACATATACCACCAGAACTGGGGAACATGAGTAAACTTAGCTACCT                         GCAGCTGAATGACAATGAATTAGTGGGCACAATCCCAGCTGAGCTTGGCAA
genomic: ACTGGACATATACCACCAGAACTGGGGAACATGAGTAAACTTAGCTACCTgtaagttact ... gttccaccagGCAGCTGAATGACAATGAATTAGTGGGCACAATCCCAGCTGAGCTTGGCAA