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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAACACTATTGATAGAGCCTAAACCACAGGAACCAACAAAACACCAgtatgctacttactcagtaatgaattagcaaagtatcctacaggattcagaaacatttatccttgtttctctggcag

Basic information

species Zea mays
transcript GRMZM2G081682_T01
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G081682_T01 (Zea mays), 5'ss of exon 12
lower sequence: LOC_Os07g47290.1 (Oryza sativa), 5'ss of exon 12
GAACACTATTGATAGAGCCTAAACCACAGGAACCAACAAAACACCAgtatgctacttactcagtaatgaattagcaaagtatcctacaggattcagaaacatttatccttgttt---ctctggcag
||||||| |||||||||||||||||||| ||||| ||||||||||||||||||  ||| |      |  |||| |||| | ||| |||||||| |  ||   | | ||||||||   ||||  |||
GAACACTCTTGATAGAGCCTAAACCACAAGAACCCACAAAACACCAgtatgcttattagtt-----tacattaacaaaatgtcc-acaggattaaacaatcctaacccttgtttgtcctctcccag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211073602|gb|FL380705.1|FL380705
EST:     GAACACTATTGATAGAGCCTAAACCACAGGAACCAACAAAACACCA                         GTATGACTGGGATGTTGCGACTACGTTTGCTTTTCTACAGAAGTACGGTCT
genomic: GAACACTATTGATAGAGCCTAAACCACAGGAACCAACAAAACACCAgtatgctact ... tctctggcagGTATGACTGGGATGTTGCGACTACGTTTGCTTTTCTACAGAAGTACGGTCT
EST: gi|31349785|gb|CD434142.1|CD434142
EST:     GAACACTATTGATAGAGCCTAAACCACAGGAACCAACAAAACACCA                         GTATGACTGGGATGTTGCGACTACGTTTGCTTTTCTACAGAAGTACGGTCT
genomic: GAACACTATTGATAGAGCCTAAACCACAGGAACCAACAAAACACCAgtatgctact ... tctctggcagGTATGACTGGGATGTTGCGACTACGTTTGCTTTTCTACAGAAGTACGGTCT
EST: gi|33092171|gb|CF052165.1|CF052165
EST:     GAACACTATTGATAGAGCCTAAACCACAGGAACCAACAAAACACCA                         GTATGACTGGGATGTTGCGACTACGTTTGCTTTTCTACAGAAGTAC
genomic: GAACACTATTGATAGAGCCTAAACCACAGGAACCAACAAAACACCAgtatgctact ... tctctggcagGTATGACTGGGATGTTGCGACTACGTTTGCTTTTCTACAGAAGTAC
EST: gi|6194746|gb|AW146850.1|AW146850
EST:     GAACACTATTGATAGAGCCTAAACCACAGGAACCAACAAAACACCA                         GTATGACTGGGATGTTGCGACTACGTTTGCTTTTCTACAGAAGTACGGTCT
genomic: GAACACTATTGATAGAGCCTAAACCACAGGAACCAACAAAACACCAgtatgctact ... tctctggcagGTATGACTGGGATGTTGCGACTACGTTTGCTTTTCTACAGAAGTACGGTCT
EST: gi|5296207|gb|AI782887.1|AI782887
EST:     GAACACTATTGATAGAGCCTAAACCACAGGAACCAACAAAACACCA                         GTATGACTGGGATGTTGCGACTACGTTTGCTTTTCTACAGAAGTACGGTCT
genomic: GAACACTATTGATAGAGCCTAAACCACAGGAACCAACAAAACACCAgtatgctact ... tctctggcagGTATGACTGGGATGTTGCGACTACGTTTGCTTTTCTACAGAAGTACGGTCT
EST: gi|74232803|gb|DT640717.1|DT640717
EST:     ATAGAGCCTAAACCACAGGAACCAACAAAACACCA                         GTATGACTGGGATGTTGCGACTACGTTTGCTTTTCTACAGAAGTACGGTCT
genomic: ATAGAGCCTAAACCACAGGAACCAACAAAACACCAgtatgctact ... tctctggcagGTATGACTGGGATGTTGCGACTACGTTTGCTTTTCTACAGAAGTACGGTCT
EST: gi|5846747|gb|AI999830.1|AI999830
EST:     GAACACTATTGATAGAGCCTAAACCACAGGAACCAACAAAACACCA                         GTATGACTGGGATGTTGCGACTACGTTTGCTTTTCTACAGAAGTACGGTCT
genomic: GAACACTATTGATAGAGCCTAAACCACAGGAACCAACAAAACACCAgtatgctact ... tctctggcagGTATGACTGGGATGTTGCGACTACGTTTGCTTTTCTACAGAAGTACGGTCT
EST: gi|211313620|gb|FL416741.1|FL416741
EST:     AGAGCCTAAACCACAGGAACCAACRAAACACCA                         GTATGACTGGAATGTTGCGACTACGTTTGCTTTTCTACAGAAGTACGGTCT
genomic: AGAGCCTAAACCACAGGAACCAACAAAACACCAgtatgctact ... tctctggcagGTATGACTGGGATGTTGCGACTACGTTTGCTTTTCTACAGAAGTACGGTCT
EST: gi|31250143|gb|CD219167.1|CD219167
EST:     AACGGAACACTATTGATAGAGCCTAAACCACAGGAACCAACAAAACACCA                         GTATGACTGGGATGTTGCGACTACGTTTGCTTTTCTACAGAAGTACGGTCC
genomic: AACGGAACACTATTGATAGAGCCTAAACCACAGGAACCAACAAAACACCAgtatgctact ... tctctggcagGTATGACTGGGATGTTGCGACTACGTTTGCTTTTCTACAGAAGTACGGTCT
EST: gi|211434578|gb|FL418942.1|FL418942
EST:     GAACACTATTGATAGAGCCTAAACCACAGGAACCAACAAAACACCA                         GTATGACTGGGATGTTGCGACTACGTTTGCTTTTCTACAGAAGTACGGTCT
genomic: GAACACTATTGATAGAGCCTAAACCACAGGAACCAACAAAACACCAgtatgctact ... tctctggcagGTATGACTGGGATGTTGCGACTACGTTTGCTTTTCTACAGAAGTACGGTCT