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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGCAGGACTTTCTTTTAGATGAAAACCACAGCCTGCCAGAGATTGATAGTGATAGTGTTGGATCACGATTGCAGgtaaagttcactttataacttcaagtaagtttacacagaatttggaccctgtatatttttagtcaagtctagcaattttacccatgcgatgcattctctt...

Basic information

species Zea mays
transcript GRMZM2G081642_T01
intron # 12
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|149069964|gb|EE158363.2|EE158363
EST:     GAGATTGATAGTGATAGTGTTGGATCACGATTGCAG                         GATAAAAGAAGTAGGCGCAATGAGGAGTCATTTTCATTCACAAGCTCTAAC
genomic: GAGATTGATAGTGATAGTGTTGGATCACGATTGCAGgtaaagttca ... ttccttatagGATAAAAGAAGTAGGCGCAATGAGGAGTCATTTTCATTCACAAGCTCTAAC
EST: gi|32858949|gb|CD998630.1|CD998630
EST:     ACCACAGCCTGCCAGAGATTGATAGTGATAGTGTTGGATCACGATTGCAG                         GATAAAAGAAGTAGGCGCAATGAGGAGTCATTTTTATT-ATAAGCTCTAAC
genomic: ACCACAGCCTGCCAGAGATTGATAGTGATAGTGTTGGATCACGATTGCAGgtaaagttca ... ttccttatagGATAAAAGAAGTAGGCGCAATGAGGAGTCATTTTCATTCACAAGCTCTAAC
EST: gi|21481154|gb|BQ577837.1|BQ577837
EST:     ACCACAGCCTGCCAGAGATTGATAGTGATAGTGTTGGATCACGATTGCAG                         GATAAAAGAAGTAGGCGCAATGAGGAGTCATTTTCATTCACAAGCTCTAAC
genomic: ACCACAGCCTGCCAGAGATTGATAGTGATAGTGTTGGATCACGATTGCAGgtaaagttca ... ttccttatagGATAAAAGAAGTAGGCGCAATGAGGAGTCATTTTCATTCACAAGCTCTAAC
EST: gi|71757857|gb|DR955794.1|DR955794
EST:     AGAGATTGATAGTGATAGTGTTGGATCACGATTGCAG                         GATAAAAGAAGTAGGCGCAATGAGGAGTCATTTTCATTCACAAGCTCTAAC
genomic: AGAGATTGATAGTGATAGTGTTGGATCACGATTGCAGgtaaagttca ... ttccttatagGATAAAAGAAGTAGGCGCAATGAGGAGTCATTTTCATTCACAAGCTCTAAC
EST: gi|21329781|gb|BQ485162.1|BQ485162
EST:     ACCACAGCCTGCCAGAGATTGATAGTGATAGTGTTGGATCACGATTGCAG                         GATAAAAGAAGTAGGCGCAATGAGGAGTCATTTTCATTCACAAGCTCTAAC
genomic: ACCACAGCCTGCCAGAGATTGATAGTGATAGTGTTGGATCACGATTGCAGgtaaagttca ... ttccttatagGATAAAAGAAGTAGGCGCAATGAGGAGTCATTTTCATTCACAAGCTCTAAC
EST: gi|78125549|gb|DV543933.1|DV543933
EST:     ACCACAGCCTGCCAGAGATTGATAGTGATAGTGTTGGATCACGATTGCAG                         GATAAAAGAAGTAGGCGCAATGAGGAGTCATTTTCATTCACAAGCTCTAAC
genomic: ACCACAGCCTGCCAGAGATTGATAGTGATAGTGTTGGATCACGATTGCAGgtaaagttca ... ttccttatagGATAAAAGAAGTAGGCGCAATGAGGAGTCATTTTCATTCACAAGCTCTAAC
EST: gi|5804604|gb|AI979574.1|AI979574
EST:     CAGCCTGCCAGAGATTGATAGTGATAGTGTTGGATCACGATTGCAG                         GATAAAAGAAGTAGGCGCAATGAGGAGTCATTTTCATTCCCAAGCTCTAAC
genomic: CAGCCTGCCAGAGATTGATAGTGATAGTGTTGGATCACGATTGCAGgtaaagttca ... ttccttatagGATAAAAGAAGTAGGCGCAATGAGGAGTCATTTTCATTCACAAGCTCTAAC
EST: gi|211126998|gb|FL461335.1|FL461335
EST:     CCACAGCCTGCCCAAAGATTGATAGTGATAGTGTTGGACCACGATTGCAG                         GATAAAAGAAGTAGGCGCAATGAGGAGTCATTTTCATTCACAAGCTCTAAC
genomic: CCACAGCCTG-CCAGAGATTGATAGTGATAGTGTTGGATCACGATTGCAGgtaaagttca ... ttccttatagGATAAAAGAAGTAGGCGCAATGAGGAGTCATTTTCATTCACAAGCTCTAAC