1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
TCTGTACTCTAGAAACATGGATTTCCTGGCACACATCGCTGAATCTTGCAAAATAGTTTCCTCATCATATGGAACATTCAAGAAGAAAGCTAGGGAACAGgtaaaaactccccgtcttcatgataaatgcacatgtccattatatatgttagttctgacagtgacaaccaaccacattgtgttttgtgtttcag
species | Zea mays |
transcript | GRMZM2G081188_T02 |
intron # | 12 |
splice site | 5' |
intron type | U2 |
EST: AAATAGTTTCCTCATCATATGGAACATTCAAGAAGAAAGCTAGGGAACAG GGTTGGATAATGTCAGAATCTCTGCTCAACCCTGGCAAGGCTCGATTATGTEST: gi|74240504|gb|DT648418.1|DT648418
genomic: AAATAGTTTCCTCATCATATGGAACATTCAAGAAGAAAGCTAGGGAACAGgtaaaaactc ... tgtgtttcagGGTTGGATAATGTCAGAATCTCTGCTCAACCCTGGCAAGGCTCGATTATGT
EST: AAATAGTTTCCTCATCATATGGAACATTCAAGAAGAAAGCTAGGGAACAG GGTTGGATAATGTCAGAATCTCTGCTCAACCCTGGCAAGGCTCGATTATGTEST: gi|148953713|gb|EC899077.2|EC899077
genomic: AAATAGTTTCCTCATCATATGGAACATTCAAGAAGAAAGCTAGGGAACAGgtaaaaactc ... tgtgtttcagGGTTGGATAATGTCAGAATCTCTGCTCAACCCTGGCAAGGCTCGATTATGT
EST: AAATAGTTTCCTCATCATATGGAACATTCAAGAAGAAAGCTAGGGAACAG GGTTGGATAATGTCAGAATCTTTGCTCAACCCTGGCAAGGCTCGATTATGTEST: gi|32936978|gb|CF041797.1|CF041797
genomic: AAATAGTTTCCTCATCATATGGAACATTCAAGAAGAAAGCTAGGGAACAGgtaaaaactc ... tgtgtttcagGGTTGGATAATGTCAGAATCTCTGCTCAACCCTGGCAAGGCTCGATTATGT
EST: AAATCGTTTCCTCATCATATGGAACATTCAAGAAGAAAGCAAGGGAACAG GGTTGGATAATGTCAGAATCTCTGCTCAACCCTGGCAAGGCTCGATTATGTEST: gi|6526668|gb|AW215959.1|AW215959
genomic: AAATAGTTTCCTCATCATATGGAACATTCAAGAAGAAAGCTAGGGAACAGgtaaaaactc ... tgtgtttcagGGTTGGATAATGTCAGAATCTCTGCTCAACCCTGGCAAGGCTCGATTATGT
EST: AAATAGTTTCCTCATCATATGGAACATTCAAGAAGAAAGCTAGGGAACAG GGTTGGATAATGTCAGAATCTCTGCTCAACCCTGGCAAGGCTCGATTATGTEST: gi|32864357|gb|CF004039.1|CF004039
genomic: AAATAGTTTCCTCATCATATGGAACATTCAAGAAGAAAGCTAGGGAACAGgtaaaaactc ... tgtgtttcagGGTTGGATAATGTCAGAATCTCTGCTCAACCCTGGCAAGGCTCGATTATGT
EST: GGAACATTCAAGAAGAAAGCAAGGGAACAG GGTTGGATAATGTCAGAATCTCTGCTCAACCCTGGCAAGGGCTCGATTATG
genomic: GGAACATTCAAGAAGAAAGCTAGGGAACAGgtaaaaactc ... tgtgtttcagGGTTGGATAATGTCAGAATCTCTGCTCAACCCTGGCAA-GGCTCGATTATG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCTGTACTCTAGAAACATGGATTTCCTGGCACACATCGCTGAATCTTGCAAAATAGTTTCCTCATCATATGGAACATTCAAGAAGAAAGCTAGGGAACAGgtaaaaactccccgtcttcatgataaatgcacatgtccattatatatgttagttctgacagtgacaaccaaccacattgtgttttgtgtttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA