1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
CAACCTCTTCATTATCGGCACGTCACTGTTCCTCGGTATCTCCATCCCGGAGTACTTCTTCCACTATGATCATGGACCGTCACATACTAGAGCTGGATGGgtatgtagccctcgccgaaactcgctgccatcagctgaaaacctgagttctgaactcaacctaacatttttttttttgtgcaatatgcag
species | Zea mays |
transcript | GRMZM2G080387_T01 |
intron # | 12 |
splice site | 5' |
intron type | U2 |
EST: AGTACTTCTTCCACTATGATCATGGACCGTCACATACTAGAGCTGGATGG TTCAATGACCTCATCAACACCATEST: gi|116821257|gb|EC864557.1|EC864557
genomic: AGTACTTCTTCCACTATGATCATGGACCGTCACATACTAGAGCTGGATGGgtatgtagcc ... caatatgcagTTCAATGACCTCATCAACACCAT
EST: AGTACTTCTTCCACTATGATCATGGACCGTCACATACTAGAG-TGGATGG TTCAATGACCTCATCAACACCATCTTCTCCTCACCCCCGACCGTTGGTTTCEST: gi|166665332|gb|EG233876.1|EG233876
genomic: AGTACTTCTTCCACTATGATCATGGACCGTCACATACTAGAGCTGGATGGgtatgtagcc ... caatatgcagTTCAATGACCTCATCAACACCATCTTCTCCTCACCCCCGACCGTTGGTTTC
EST: AGTACTTCTTCCACTATGATCATGGACCGTCACATACTAGAGCTGGATGG TTCAATGACCTCATCAACACCATCTTCTCCTCACC
genomic: AGTACTTCTTCCACTATGATCATGGACCGTCACATACTAGAGCTGGATGGgtatgtagcc ... caatatgcagTTCAATGACCTCATCAACACCATCTTCTCCTCACC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAACCTCTTCATTATCGGCACGTCACTGTTCCTCGGTATCTCCATCCCGGAGTACTTCTTCCACTATGATCATGGACCGTCACATACTAGAGCTGGATGGgtatgtagccctcgccgaaactcgctgccatcagctgaaaacctgagttctgaactcaacctaacatttttttttttgtgcaatatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA