1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
GGCGCTCTCAATTGATGACATGGCAGGTGGAACATTCACCATCTCCAACGGTGGTGTCTATGGAAGCCTCCTCAGCACACCTATCATCAACCCTCCACAGgtaactgctgcacatttatcagtagcaacacaattttgtatcatgtagatgtttattgatctgaaatgtgatctatgtgaattgcag
species | Zea mays |
transcript | GRMZM2G079538_T03 |
intron # | 12 |
splice site | 5' |
intron type | U2 |
EST: GTGGTGTCTATGGAAGCCTCCTCAGCACACCTATCATCAACCCTCCACAG TCGTCTATTCTGGGGATGCATTCCATTGKGCAACGCCCTGTGGTTGKGAATEST: gi|6102024|gb|AW126494.1|AW126494
genomic: GTGGTGTCTATGGAAGCCTCCTCAGCACACCTATCATCAACCCTCCACAGgtaactgctg ... tgaattgcagTCGTCTATTCTGGGGATGCATTCCATTGTGCAACGCCCTGTGGTTGTGAAT
EST: GTGGTGTCTATGGAAGCCTCCTCAGCACACCTATCATCAACCCTCCACAG TCGTCTATTCTGGGGATGCATTCCATTGTGCAACGCCCTGTGGTTGTGAATEST: gi|110528815|gb|EE032999.1|EE032999
genomic: GTGGTGTCTATGGAAGCCTCCTCAGCACACCTATCATCAACCCTCCACAGgtaactgctg ... tgaattgcagTCGTCTATTCTGGGGATGCATTCCATTGTGCAACGCCCTGTGGTTGTGAAT
EST: GTGGTGTCTATGGAAGCCTCCTCAGCACACCTATCATCAACCCTCCACAG TCGTTTATTCTGGGGATGCATTCCATTGTGCAACGCCCTGTGGTTGTGAATEST: gi|31363969|gb|CD448324.1|CD448324
genomic: GTGGTGTCTATGGAAGCCTCCTCAGCACACCTATCATCAACCCTCCACAGgtaactgctg ... tgaattgcagTCGTCTATTCTGGGGATGCATTCCATTGTGCAACGCCCTGTGGTTGTGAAT
EST: GTGGTGTCTATGGAAGCCTCCTCAGCACACCTATCATCAACCCTCCACAG TCGTCTATTCTGGGGATGCATTCCATTGTGCAACGCCCTGTGGTTGTGAATEST: gi|6021309|gb|AW066237.1|AW066237
genomic: GTGGTGTCTATGGAAGCCTCCTCAGCACACCTATCATCAACCCTCCACAGgtaactgctg ... tgaattgcagTCGTCTATTCTGGGGATGCATTCCATTGTGCAACGCCCTGTGGTTGTGAAT
EST: GTGGTGTCTATGGAAGCCTCCTCAGCACACCTATCATCAACCCTCCACAG TCGTCTATTCTGGGGATGCATTCCATTGTGCAACGCCCTGTGGTTGTGAATEST: gi|13558099|gb|BG549455.1|BG549455
genomic: GTGGTGTCTATGGAAGCCTCCTCAGCACACCTATCATCAACCCTCCACAGgtaactgctg ... tgaattgcagTCGTCTATTCTGGGGATGCATTCCATTGTGCAACGCCCTGTGGTTGTGAAT
EST: GTGGTGTCTATGGAAGCCTCCTCAGCACACCTATCATCAACCCTCCACAG TCGTCTATTCTGGGGATGCATTCCATTGTGCAACGCCCTGTGGTTGTGAATEST: gi|13558422|gb|BG549778.1|BG549778
genomic: GTGGTGTCTATGGAAGCCTCCTCAGCACACCTATCATCAACCCTCCACAGgtaactgctg ... tgaattgcagTCGTCTATTCTGGGGATGCATTCCATTGTGCAACGCCCTGTGGTTGTGAAT
EST: GTGGTGTCTATGGAAGCTTTTTCTGCACACCTATCATCAACCCTCCACAG TCGTCTATTCTGGGGATGCATTCCATTGTGCAACGCCCTGTGGTTGTGAATEST: gi|31358903|gb|CD443260.1|CD443260
genomic: GTGGTGTCTATGGAAGCCTCCTCAGCACACCTATCATCAACCCTCCACAGgtaactgctg ... tgaattgcagTCGTCTATTCTGGGGATGCATTCCATTGTGCAACGCCCTGTGGTTGTGAAT
EST: GTGGTGTCTATGGAAGCCTCCTCAGCACACCTATCATCAACCCTCCACAG TCGTCTATTCTGGGGATGCATTCCATTGTGCAACGCCCTGTGGTTGTGAATEST: gi|4804479|gb|AI665349.2|AI665349
genomic: GTGGTGTCTATGGAAGCCTCCTCAGCACACCTATCATCAACCCTCCACAGgtaactgctg ... tgaattgcagTCGTCTATTCTGGGGATGCATTCCATTGTGCAACGCCCTGTGGTTGTGAAT
EST: GTGGTGTCTATGGAAGCCTCCTCAGCACACCTATCATCAACCCTCCACAG TCGTCTATTCTGGGGATGCATTCCATTGTGCAACGCCCTGTGGTTGTGAATEST: gi|211169880|gb|FL077609.1|FL077609
genomic: GTGGTGTCTATGGAAGCCTCCTCAGCACACCTATCATCAACCCTCCACAGgtaactgctg ... tgaattgcagTCGTCTATTCTGGGGATGCATTCCATTGTGCAACGCCCTGTGGTTGTGAAT
EST: GTGGTGTCTATGGAAGCCTCCTCAGCACACCTATCATCAACCNTNCACAG TCGTCTATTCTGGGGATGCATTCCATTGTGCAAEST: gi|32830086|gb|CD969764.1|CD969764
genomic: GTGGTGTCTATGGAAGCCTCCTCAGCACACCTATCATCAACCCTCCACAGgtaactgctg ... tgaattgcagTCGTCTATTCTGGGGATGCATTCCATTGTGCAA
EST: GTGGTGTCTATGGAAGCCTCCTCAGCACACCTATCATCAACCCTCCACAG TCGTCTATTCTGGGGATGCATTCCATTGTGCAACGCCCTGTGGTTGTGAATEST: gi|211174261|gb|FL479898.1|FL479898
genomic: GTGGTGTCTATGGAAGCCTCCTCAGCACACCTATCATCAACCCTCCACAGgtaactgctg ... tgaattgcagTCGTCTATTCTGGGGATGCATTCCATTGTGCAACGCCCTGTGGTTGTGAAT
EST: CTCAGCACACCTATCATCAACCCTCCACAG TCGTCTATTCTGGGGATGCATTCCATTGTGCAACGCCCTGTGGTTGTGAATEST: gi|211081302|gb|FL464951.1|FL464951
genomic: CTCAGCACACCTATCATCAACCCTCCACAGgtaactgctg ... tgaattgcagTCGTCTATTCTGGGGATGCATTCCATTGTGCAACGCCCTGTGGTTGTGAAT
EST: GTGGTGTCTATGGAAGCCTCCTCAGCACACCTATCATCAACCCTCCACAG TCGTCTATTCTGGGGATGCATTCCATTGTGCAACGCCCTGTGGTTGTGAATEST: gi|13558100|gb|BG549456.1|BG549456
genomic: GTGGTGTCTATGGAAGCCTCCTCAGCACACCTATCATCAACCCTCCACAGgtaactgctg ... tgaattgcagTCGTCTATTCTGGGGATGCATTCCATTGTGCAACGCCCTGTGGTTGTGAAT
EST: GCGGTGTCTATGGAAGCCTCCTCAGCACACCTATCATCAACCCTCCACAG TCGTCTATTCTGEST: gi|6654256|gb|AW267661.1|AW267661
genomic: GTGGTGTCTATGGAAGCCTCCTCAGCACACCTATCATCAACCCTCCACAGgtaactgctg ... tgaattgcagTCGTCTATTCTG
EST: CTCCTCAGCACACCTATCATCAACCCTCCNCAG TCGTTTTTTCTGGGGATGCATTCCATTGTGCAACGCCCTGTGGTTGTGAATEST: gi|32942914|gb|CF047733.1|CF047733
genomic: CTCCTCAGCACACCTATCATCAACCCTCCACAGgtaactgctg ... tgaattgcagTCGTCTATTCTGGGGATGCATTCCATTGTGCAACGCCCTGTGGTTGTGAAT
EST: GTGGTGTCTATGGAAGCCTCCTCAACACACCTATCATCAACCCTCCACAG TCGTCTATTCTGGGGATGCATTCCATTGTGCAACGCCCTGTGGTTGTGAATEST: gi|32933424|gb|CF038236.1|CF038236
genomic: GTGGTGTCTATGGAAGCCTCCTCAGCACACCTATCATCAACCCTCCACAGgtaactgctg ... tgaattgcagTCGTCTATTCTGGGGATGCATTCCATTGTGCAACGCCCTGTGGTTGTGAAT
EST: GTGGTGTCTATGGAAGCCTCCTCAGCACACCTATCATCAACCCTCCACAG TCGTCTATTCTGGGGATGCATTCCATTGTGCAACGCCCTGTGGTTGTGAATEST: gi|60358853|gb|DN225826.1|DN225826
genomic: GTGGTGTCTATGGAAGCCTCCTCAGCACACCTATCATCAACCCTCCACAGgtaactgctg ... tgaattgcagTCGTCTATTCTGGGGATGCATTCCATTGTGCAACGCCCTGTGGTTGTGAAT
EST: GTGGTGTCTATGGAAGCCTCCTCAGCACACCTATCATCAACCCTCCACAG TCGTCTATTCTGGGGATGCATTCCATTGTGCAACGCCCTGTGGTTGTGAATEST: gi|6227238|gb|AW155837.1|AW155837
genomic: GTGGTGTCTATGGAAGCCTCCTCAGCACACCTATCATCAACCCTCCACAGgtaactgctg ... tgaattgcagTCGTCTATTCTGGGGATGCATTCCATTGTGCAACGCCCTGTGGTTGTGAAT
EST: GTGGTGTCTATGGAAGCCTCCTCAGCACACCTATCATCAACCCTCCACAG TCGTCTATTCTGGGGATGCATTCCATTGTGCAACGCCCTG-GGTTGEST: gi|166470787|gb|EG142344.1|EG142344
genomic: GTGGTGTCTATGGAAGCCTCCTCAGCACACCTATCATCAACCCTCCACAGgtaactgctg ... tgaattgcagTCGTCTATTCTGGGGATGCATTCCATTGTGCAACGCCCTGTGGTTG
EST: GTGGTGTCTATGGAAGCCTCCTCAGCACACCTATCATCAACCCTCCACAG TCGTCTATTCTGGGGEST: gi|149009739|gb|EE154080.2|EE154080
genomic: GTGGTGTCTATGGAAGCCTCCTCAGCACACCTATCATCAACCCTCCACAGgtaactgctg ... tgaattgcagTCGTCTATTCTGGGG
EST: GTGGTGTCTATGGAAGCCTCCTCAGCACACCTATCATCAACCCTCCACAG TCGTTTATTCTGGGGATGCATTCCATTGTGCAACGCCCTGTGGTTGTGAATEST: gi|211169873|gb|FL077602.1|FL077602
genomic: GTGGTGTCTATGGAAGCCTCCTCAGCACACCTATCATCAACCCTCCACAGgtaactgctg ... tgaattgcagTCGTCTATTCTGGGGATGCATTCCATTGTGCAACGCCCTGTGGTTGTGAAT
EST: TGGTGTCTATGGAAGCCTCCTCAGCACACCTAATCATCAACCCTC-ACAG TCGTCTATTCTGGGGATGCATTEST: gi|148978724|gb|EE026282.2|EE026282
genomic: TGGTGTCTATGGAAGCCTCCTCAGCACACCTA-TCATCAACCCTCCACAGgtaactgctg ... tgaattgcagTCGTCTATTCTGGGGATGCATT
EST: GTGGTGTTTATGGAAGCCTCCTCAGCACACCTATCATCAACCCTCCACAG TCGTTTATTTTGGGGATGCATTCCATTGTGCAACGCCCTGTGGTTGTGAATEST: gi|32867029|gb|CF006711.1|CF006711
genomic: GTGGTGTCTATGGAAGCCTCCTCAGCACACCTATCATCAACCCTCCACAGgtaactgctg ... tgaattgcagTCGTCTATTCTGGGGATGCATTCCATTGTGCAACGCCCTGTGGTTGTGAAT
EST: GTGGTGTCTATGGAAGCCTCCTCAGCACACCTATCATCAACCCTCCACAG TCGTCTATTCTGGGGATGCATTCCATTGTGCAACGCCCTGTGGTTGTGAATEST: gi|8368148|gb|BE051093.1|BE051093
genomic: GTGGTGTCTATGGAAGCCTCCTCAGCACACCTATCATCAACCCTCCACAGgtaactgctg ... tgaattgcagTCGTCTATTCTGGGGATGCATTCCATTGTGCAACGCCCTGTGGTTGTGAAT
EST: GTGGTGTCTATGGAAGCCTCCTCAGCACACCTATCATCAACCCTCCACAG TCGTCTATTCTGGGGATGCATTCCATTGTGCAACGCCCTGTGGTTGTGAATEST: gi|78022452|gb|DV490839.1|DV490839
genomic: GTGGTGTCTATGGAAGCCTCCTCAGCACACCTATCATCAACCCTCCACAGgtaactgctg ... tgaattgcagTCGTCTATTCTGGGGATGCATTCCATTGTGCAACGCCCTGTGGTTGTGAAT
EST: GTGGTGTCTATGGAAGCCTCCTCAGCACACCTATCATCAACCCTCCACAG TCGTCTATTCTGGGGATGCATTCCATTGTGCAACGCCCTGTGGTTGTGAATEST: gi|14548407|gb|BI096736.1|BI096736
genomic: GTGGTGTCTATGGAAGCCTCCTCAGCACACCTATCATCAACCCTCCACAGgtaactgctg ... tgaattgcagTCGTCTATTCTGGGGATGCATTCCATTGTGCAACGCCCTGTGGTTGTGAAT
EST: GTGGTGTCTATGGAAGCCTCCTCAGCACACCTATCATCAACCCTCCACAG TCGTCTATTCTGGGGATGCATTCCATTGTGCAACGCCCTGTGGTTGTGAATEST: gi|166524759|gb|EG130537.1|EG130537
genomic: GTGGTGTCTATGGAAGCCTCCTCAGCACACCTATCATCAACCCTCCACAGgtaactgctg ... tgaattgcagTCGTCTATTCTGGGGATGCATTCCATTGTGCAACGCCCTGTGGTTGTGAAT
EST: GTGGTGTCTATGGAAGCCTCCTCAGCACACCTATCATCAACCCTCCACAG TCGTCTATTCTGGGGATGCATTCCAEST: gi|32858121|gb|CD997802.1|CD997802
genomic: GTGGTGTCTATGGAAGCCTCCTCAGCACACCTATCATCAACCCTCCACAGgtaactgctg ... tgaattgcagTCGTCTATTCTGGGGATGCATTCCA
EST: GTGGTGTCTATGGAAGCCTCCTCAGCACACCTATCATCAACCCTCCACAG TCGTCTATTCTGGGGATGCATTCCATTGTGCAACGCCCTGTGGTTGTGAATEST: gi|13562254|gb|BG550474.1|BG550474
genomic: GTGGTGTCTATGGAAGCCTCCTCAGCACACCTATCATCAACCCTCCACAGgtaactgctg ... tgaattgcagTCGTCTATTCTGGGGATGCATTCCATTGTGCAACGCCCTGTGGTTGTGAAT
EST: GTGGTGTCTATGGAAGCCTCCTCAGCACACCTATCATCAACCCTCCACAG TCGTCTATTCTGGGGATGCATTCCATTGTGCAACGCCCTGTGGTTGTGAATEST: gi|24766295|gb|CA401450.1|CA401450
genomic: GTGGTGTCTATGGAAGCCTCCTCAGCACACCTATCATCAACCCTCCACAGgtaactgctg ... tgaattgcagTCGTCTATTCTGGGGATGCATTCCATTGTGCAACGCCCTGTGGTTGTGAAT
EST: GTGGTGTCTATGGAAGCCTCCTCAGCACACCTATCATCAACCCTCCACAG TCGTCTATTCTGGGGATGCATTCCATTGTGCAACGCCCTGTGGTTGTGAATEST: gi|21626137|gb|BQ621058.1|BQ621058
genomic: GTGGTGTCTATGGAAGCCTCCTCAGCACACCTATCATCAACCCTCCACAGgtaactgctg ... tgaattgcagTCGTCTATTCTGGGGATGCATTCCATTGTGCAACGCCCTGTGGTTGTGAAT
EST: GTGGTGTCTATGGAAGCCTCCTCAGCACACCTATCATCAACCCTCCACAG TCGTCTATTCTGGGGATGCATTCCATTGTGCAACGCCCTGTGGTTGTGAATEST: gi|32867030|gb|CF006712.1|CF006712
genomic: GTGGTGTCTATGGAAGCCTCCTCAGCACACCTATCATCAACCCTCCACAGgtaactgctg ... tgaattgcagTCGTCTATTCTGGGGATGCATTCCATTGTGCAACGCCCTGTGGTTGTGAAT
EST: GTGGTGTCTATGGAAGCCTCCTCAGCACACCTATCATCAACCCTCCACAG TCGTCTATTCTGGGGATGCATTCCATTGTGCAACGCCCTGTGGTTGTGAATEST: gi|67019048|gb|CO447797.1|CO447797
genomic: GTGGTGTCTATGGAAGCCTCCTCAGCACACCTATCATCAACCCTCCACAGgtaactgctg ... tgaattgcagTCGTCTATTCTGGGGATGCATTCCATTGTGCAACGCCCTGTGGTTGTGAAT
EST: GTGGTGTCTATGGAAGCCTCCTCAGCACACCTATCATCAACCCTCCACAG TCGTCTATTCTGGGGATGCATTCCATTGTGCAACGCCCTGTGGTTGTGAATEST: gi|44900266|gb|CK826811.1|CK826811
genomic: GTGGTGTCTATGGAAGCCTCCTCAGCACACCTATCATCAACCCTCCACAGgtaactgctg ... tgaattgcagTCGTCTATTCTGGGGATGCATTCCATTGTGCAACGCCCTGTGGTTGTGAAT
EST: GTGGTGTCTATGGAAGCCTCCTCAGCACACCTATCATCAACCCTCCACAG TCGTCTATTCTGGGGATGCATTCCATTGTGCAACGCCCTGTGGTTGTGAAT
genomic: GTGGTGTCTATGGAAGCCTCCTCAGCACACCTATCATCAACCCTCCACAGgtaactgctg ... tgaattgcagTCGTCTATTCTGGGGATGCATTCCATTGTGCAACGCCCTGTGGTTGTGAAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGCGCTCTCAATTGATGACATGGCAGGTGGAACATTCACCATCTCCAACGGTGGTGTCTATGGAAGCCTCCTCAGCACACCTATCATCAACCCTCCACAGgtaactgctgcacatttatcagtagcaacacaattttgtatcatgtagatgtttattgatctgaaatgtgatctatgtgaattgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC