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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTACAGAGCTTCACATATATACAGATTTCTTGAGAATTGTTCTGGAAATAATCAATGCAATCCTTACATATGCATTGCCCAGAAATCCCGAGgtatgtattggcctgcaattcagtttacttgacaggactagcactgcttctaacatttttgtacag

Basic information

species Zea mays
transcript GRMZM2G078576_T03
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G078576_T04 (Zea mays), 5'ss of exon 13
lower sequence: LOC_Os01g56630.2 (Oryza sativa), 5'ss of exon 13
TCTACAGAGCTTCACATATATACAGATTTCTTGAGAATTGTTCTGGAAATAATCAATGCAATCCTTACATATGCATTGCCCAGAAATCCCGAGgtatgtattggcctgcaattcagtttacttgaca----------ggactagcactgcttctaacatttttgt--acag
|| ||||| |||||||| ||||| || ||||| ||||||||||| ||||| ||||||||||| ||||||||||||||||| |||||||| |||||||||  || |  ||||||   ||||||    |           || ||  ||||||||||| || | | |  ||||
TCCACAGAACTTCACATCTATACCGACTTCTTAAGAATTGTTCTAGAAATCATCAATGCAATTCTTACATATGCATTGCCTAGAAATCCTGAGgtatgtgctgactagcaattatatttactctgtacctcatagggagaatactactgcttctaatatgtgtatcaacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|26558732|gb|CA830967.1|CA830967
EST:     TCAATGCAATCCTTACATATGCATTGCCCAGAAATCCCGAG                         GTTGTATATGCTGTATTGCATCGACAAGAGGTTTTTGAGCCATTTAAAAAT
genomic: TCAATGCAATCCTTACATATGCATTGCCCAGAAATCCCGAGgtatgtattg ... ttttgtacagGTTGTATATGCTGTATTGCATCGACAAGAGGTTTTTGAGCCATTTAAAAAT
EST: gi|87155515|gb|DY400304.1|DY400304
EST:     TGGAAATAATCAATGCAATCCTTACATATGCATTGCCCAGAAATCCCGAG                         GTTGTATATGCTGTATTGCATCGACAAGAGGTTTTTGAGCCATTTAAAAAT
genomic: TGGAAATAATCAATGCAATCCTTACATATGCATTGCCCAGAAATCCCGAGgtatgtattg ... ttttgtacagGTTGTATATGCTGTATTGCATCGACAAGAGGTTTTTGAGCCATTTAAAAAT
EST: gi|78111274|gb|DV529671.1|DV529671
EST:     AATCCTTACATATGCATTGCCCAGAAATCCCGAG                         GTTGTATATGCTGTATTGCATCGACAAGAGGTTTTTGAGCCATTTAAAAAT
genomic: AATCCTTACATATGCATTGCCCAGAAATCCCGAGgtatgtattg ... ttttgtacagGTTGTATATGCTGTATTGCATCGACAAGAGGTTTTTGAGCCATTTAAAAAT
EST: gi|32793737|gb|CD945973.1|CD945973
EST:     TGGAAATAATCAATGCAATCCTTACATATGCATTGCCCAGAAATCCCGAG                         GTTGTATATGCTGTATTGCATCGACAAGAGGTTTTTGAGCCATTTA
genomic: TGGAAATAATCAATGCAATCCTTACATATGCATTGCCCAGAAATCCCGAGgtatgtattg ... ttttgtacagGTTGTATATGCTGTATTGCATCGACAAGAGGTTTTTGAGCCATTTA
EST: gi|22472877|gb|BU037357.1|BU037357
EST:     AGAAATCCCGAG                         GTTGTATATGCTGTATTGCATCGACAAGAGGTTTTTGAGCCATTTAAAAAT
genomic: AGAAATCCCGAGgtatgtattg ... ttttgtacagGTTGTATATGCTGTATTGCATCGACAAGAGGTTTTTGAGCCATTTAAAAAT
EST: gi|93282383|gb|EB674647.1|EB674647
EST:     TGGAAATAATCAATGCAATCCTTACATATGCATTGCCCAGAAATCCCGAG                         GTTGTATATGCTGTATTGCATCGACAAGAGGTTTTTGAGCCATTTAAAAAT
genomic: TGGAAATAATCAATGCAATCCTTACATATGCATTGCCCAGAAATCCCGAGgtatgtattg ... ttttgtacagGTTGTATATGCTGTATTGCATCGACAAGAGGTTTTTGAGCCATTTAAAAAT