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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTACTCGTGTCCCTGAATATGATGTACCTGTTGTTGACAAGGCCGTGGATGCTACATGGAAGAGAGAGCAACCACGAAAGGCACCATCCGTGCCCCAAGgtttgttcttgttaatctaattgtccgtctgaaagatctgttcagacctgtctgggtttttgctagtacctgatatttgatattttattag

Basic information

species Zea mays
transcript GRMZM2G073571_T01
intron # 12
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22543321|gb|BU093759.1|BU093759
EST:     TGCTACATGGAAGAGAGAGCAACCACGAAAGGCACCATTCGTGCCCCAAG                         ATGCAGACTCATCTGTGAAAACTGCATCCAAGCCATCTGGCCGCCCCTGGG
genomic: TGCTACATGGAAGAGAGAGCAACCACGAAAGGCACCATCCGTGCCCCAAGgtttgttctt ... attttattagATGCAGACTCATCTGTGAAAACTGCATCCAAGCCATCTGGCCGCCCCTGGG
EST: gi|15177587|gb|BI398526.1|BI398526
EST:     TGCTACATGGAAGAGAGAGCAACCACGAAAGGCACCATCCGTGCCCCAAG                         ATGCAGACTCATCTGTGAAAACTGCATCCAAGCCATCTGGCC
genomic: TGCTACATGGAAGAGAGAGCAACCACGAAAGGCACCATCCGTGCCCCAAGgtttgttctt ... attttattagATGCAGACTCATCTGTGAAAACTGCATCCAAGCCATCTGGCC
EST: gi|15323596|gb|BI478854.1|BI478854
EST:     TGCTACATGGAAGAGAGAGCAACCACGAAAGGCACCATCCGTGCCCCAAG                         ATGCAGACTCATCTGTGAAAACTGCATCCAAGCCATCTGGCCGCCCCTGGG
genomic: TGCTACATGGAAGAGAGAGCAACCACGAAAGGCACCATCCGTGCCCCAAGgtttgttctt ... attttattagATGCAGACTCATCTGTGAAAACTGCATCCAAGCCATCTGGCCGCCCCTGGG
EST: gi|60401555|gb|DN234362.1|DN234362
EST:     TGCTACATGGAAGAGAGAGCAACCACGAAAGGCACCATCCGTGCCCCAAG                         ATGCAGACTCATCTGTGAAAACTGCATCCAAGCCATCTGGCCGCCCCTGGG
genomic: TGCTACATGGAAGAGAGAGCAACCACGAAAGGCACCATCCGTGCCCCAAGgtttgttctt ... attttattagATGCAGACTCATCTGTGAAAACTGCATCCAAGCCATCTGGCCGCCCCTGGG
EST: gi|15188204|gb|BI417181.1|BI417181
EST:     TGCTACATGGAAGAGAGAGCAACCACGAAAGGCACCATCCGTGCCCCAAG                         ATGCAGACTCATCTGTGAAAACTGCATCCAAGCCATCTGGCCGCCCCTGGG
genomic: TGCTACATGGAAGAGAGAGCAACCACGAAAGGCACCATCCGTGCCCCAAGgtttgttctt ... attttattagATGCAGACTCATCTGTGAAAACTGCATCCAAGCCATCTGGCCGCCCCTGGG
EST: gi|16137338|gb|BI894203.1|BI894203
EST:     TGCTACATGGAAGAGAGAGCAACCACGAAAGGCACCATCCGTGCCCCAAG                         ATGCAGACTCATCTGTGAAAACTGCATCCAAGCCATCTGGCCGCCCCTGGG
genomic: TGCTACATGGAAGAGAGAGCAACCACGAAAGGCACCATCCGTGCCCCAAGgtttgttctt ... attttattagATGCAGACTCATCTGTGAAAACTGCATCCAAGCCATCTGGCCGCCCCTGGG
EST: gi|16137339|gb|BI894204.1|BI894204
EST:     TGCTACATGGAAGAGAGAGCAACCACGAAAGGCACCATCCGTGCCCCAAG                         ATGCAGACTCATCTGTGAAAACTGCATCCAAGCCATCTGGCCGCCCCTGGG
genomic: TGCTACATGGAAGAGAGAGCAACCACGAAAGGCACCATCCGTGCCCCAAGgtttgttctt ... attttattagATGCAGACTCATCTGTGAAAACTGCATCCAAGCCATCTGGCCGCCCCTGGG
EST: gi|3172014|gb|AJ006545.1|AJ006545
EST:     TGCTACATGGAAGAGAGAGCAACCACGAAAGGCACCATTCGTGCCCCAAG                         A--C----TCATCTGTGAAAACTGCATCCAAGCCATCTGGCCGCCCCTGGG
genomic: TGCTACATGGAAGAGAGAGCAACCACGAAAGGCACCATCCGTGCCCCAAGgtttgttctt ... attttattagATGCAGACTCATCTGTGAAAACTGCATCCAAGCCATCTGGCCGCCCCTGGG
EST: gi|15177586|gb|BI398525.1|BI398525
EST:     TGCTACATGGAAGAGAGAGCAACCACGAAAGGCACCATCCGTGCCCCAAG                         ATGCAGACTCATCTGTGAAAACTGCATCCAAGCCATCTGGCCGCCCCTGGG
genomic: TGCTACATGGAAGAGAGAGCAACCACGAAAGGCACCATCCGTGCCCCAAGgtttgttctt ... attttattagATGCAGACTCATCTGTGAAAACTGCATCCAAGCCATCTGGCCGCCCCTGGG
EST: gi|8383108|gb|BE055991.1|BE055991
EST:     TGCTACATGGAAGAGAGAGCAACCACGAAAGGCACCATCCGTGCCCCAAG                         ATGCAGACTCATCTGTGAAAACTGCATCCAAGCCATCTGGCC
genomic: TGCTACATGGAAGAGAGAGCAACCACGAAAGGCACCATCCGTGCCCCAAGgtttgttctt ... attttattagATGCAGACTCATCTGTGAAAACTGCATCCAAGCCATCTGGCC
EST: gi|15323597|gb|BI478855.1|BI478855
EST:     TGCTACATGGAAGAGAGAGCAACCACGAAAGGCACCATCCGTGCCCCAAG                         ATGCAGACTCATCTGTGAAAACTGCATCCAAGCCATCTGGCCGCCCCTGGG
genomic: TGCTACATGGAAGAGAGAGCAACCACGAAAGGCACCATCCGTGCCCCAAGgtttgttctt ... attttattagATGCAGACTCATCTGTGAAAACTGCATCCAAGCCATCTGGCCGCCCCTGGG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TCTACTCGTGTCCCTGAATATGATGTACCTGTTGTTGACAAGGCCGTGGATGCTACATGGAAGAGAGAGCAACCACGAAAGGCACCATCCGTGCCCCAAGgtttgttcttgttaatctaattgtccgtctgaaagatctgttcagacctgtctgggtttttgctagtacctgatatttgatattttattag

- - - - - - - - - - - - - - - - - - - - - - - - - - -  CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAGCA