Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAATGGTTTCGATGGCACCGATACACATTACTTCCATGGTGGTCCACGAGGCCATCATTGGATGTGGGATTCTCGCCTATTCAATTATGGGAGTTGGGAAgtatgtcatgtgcagaatgtattagctaatagttcatatttattttctatacacacataacaattcattttgtgcag

Basic information

species Zea mays
transcript GRMZM2G073054_T02
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G073054_T02 (Zea mays), 5'ss of exon 12
lower sequence: GLYMA19G37750.2 (Glycine max), 5'ss of exon 12
GAATGGTTTCGATGGCACCGATACACATTACTTCCATGGTGGTCCACGAGGCCATCATTGGATGTGGGATTCTCGCCTATTCAATTATGGGAGTTGGGAAgtatgtcatg----tgcagaatgtattagctaatagttcatatttattttctatacacac------ataacaattcattttgtgcag------------
|||    || ||||| || |||   ||||||||||||  |||  |||||||  ||||||||||||||||||||||||| || || ||||| || ||||||||| ||  ||       |||||  ||| ||  |   |    |   | |||||||||   |      | |  || | | ||  |  |             
GAACATGTTTGATGGAACTGATGGTCATTACTTCCATCCTGGGTCACGAGGTTATCATTGGATGTGGGATTCTCGCCTTTTTAACTATGGAAGCTGGGAAgtaagtgctggctccaaagaattcattggcatagtatctgaaaaaaatttctataccttctgttcaacagtaaatgacttactttaattcttaatttag

upper sequence: GRMZM2G073054_T02 (Zea mays), 5'ss of exon 12
lower sequence: GLYMA03G35020.1 (Glycine max), 5'ss of exon 12
GAATGGTTTCGATGGCACCGATACACATTACTTCCATGGTGGTCCACGAGGCCATCATTGGATGTGGGATTCTCGCCTATTCAATTATGGGAGTTGGGAAgtatgtcatg----tgcagaatgtattagctaatagttcatattta--ttttctatacacac------ataacaattcattttgtgcag------------
|||    || ||||| || |||   ||||||||||||  |||  |||||||  ||||||||||||||||||||||||| || || || || || ||||||||| ||  ||       |||||  ||| ||  ||||||  |    |  |||||  |||   |      | |  || | | ||  |  |             
GAACATGTTTGATGGAACTGATGGTCATTACTTCCATCCTGGGTCACGAGGTTATCATTGGATGTGGGATTCTCGCCTTTTTAACTACGGAAGCTGGGAAgtaagtgctggctccaaagaattcattggc--atagtttctgacaaaattttccgtaccttctgttcaacagtaagtgacttactttaattcttaatttag

upper sequence: GRMZM2G073054_T02 (Zea mays), 5'ss of exon 12
lower sequence: AT2G36390.1 (Arabidopsis thaliana), 5'ss of exon 12
GAATGGTTTCGATGGCACCGATACACATTACTTCCATGGTGGTCCACGAGGCCATCATTGGATGTGGGATTCTCGCCTATTCAATTATGGGAGTTGGGAAgtatgtcatgt---gcagaatgtattagctaatagttc---atatttattttctatacacacataacaattcattttgtgcag------------------------------------
| |    || ||||| || |||   || || |||||   |||  | || ||  |||||||||||||||||||||| || |||||||| || || |||||||||||||   |   | ||| |  ||     |||| ||      |    |||  | ||  | |||     |   || |||   |                                    
GGACATGTTTGATGGTACTGATGGTCAATATTTCCACTCTGGATCGCGTGGTTATCATTGGATGTGGGATTCTCGTCTTTTCAATTACGGAAGCTGGGAAgtatgtctctttccgtagagttgatattgcaatatttatgggaaagcctttagtgtagccccatgctggtg-gttatgtctggtccttgtgtattgacgtttggtccttgtgtatttag

upper sequence: GRMZM2G073054_T02 (Zea mays), 5'ss of exon 12
lower sequence: AT5G03650.1 (Arabidopsis thaliana), 5'ss of exon 12
GAATGGTTTCGATGGCACCGATACACATTACTTCCATGGTGGTCCACGAGGCCATCATTGGATGTGGGATTCTCGCCTATTCAATTATGGGAGTTGGGAAgtatgtcatgt----gcagaatgtattagctaat--agttcatatttattttctatacacaca--------taacaattcattttgtgcag---------
|||    || ||||| || ||| | || || || ||   ||| || || ||  | ||||||||||||||||| || || |||||||||||||| |||||||||||| |  |    |   | | || | |  |||  |||  | ||  |  |||  ||  |||          |||| |   |||||  |           
GAACATGTTTGATGGAACTGATGCTCACTATTTTCACTCTGGACCTCGGGGATACCATTGGATGTGGGATTCACGACTTTTCAATTATGGGAGCTGGGAAgtatgtaactttttcgtgaattttaatcgaaaatgtagtgaacatacaacttccttaagcactatcagttccaacagtctcttttgatcttttctaacag

upper sequence: GRMZM2G073054_T02 (Zea mays), 5'ss of exon 12
lower sequence: Vv08s0007g03750.t01 (Vitis vinifera), 5'ss of exon 12
GAATGGTTTCGATGGCACCGATACACATTACTTCCATGGTGGTCCACGAGGCCATCATTGGATGTGGGATTCTCGCCTATTCAATTATGGGAGTTGGGAAgtatgtcatgtgcag--aatgtattagctaatagttcatatttattttctatacacacataacaattcattttgtgcag--------------------
 ||  | || ||||| || ||||  || || ||||||  |||  || | ||  | || |||||||||||||||||||| || ||||| || || ||||||||||||  | ||  |  || || | |   ||||||     |||    | ||| | |  ||     ||  || |  | |                     
AAACAGGTTTGATGGAACTGATAGTCACTATTTCCATTCTGGATCAAGGGGTTACCACTGGATGTGGGATTCTCGCCTTTTTAATTACGGAAGCTGGGAAgtatgtgctttgatgccaaagt-tcaagaaatagtgt---tttgccctttatgctcttattgttttttgttgtagggattaattgtctctttgttttag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67035192|gb|CO463725.1|CO463725
EST:     GCCATCATTGGATGTGGGATTCTCGCCTATTCAATTATGGGAGTTGGGAA                         GTTTTGAGATTTCTATTGTCAAATGCGAGATGGTGGCTTGAAGAATATAAA
genomic: GCCATCATTGGATGTGGGATTCTCGCCTATTCAATTATGGGAGTTGGGAAgtatgtcatg ... ttttgtgcagGTTTTGAGATTTCTATTGTCAAATGCGAGATGGTGGCTTGAAGAATATAAA
EST: gi|101386689|gb|EB815361.1|EB815361
EST:     GCCATCATTGGATGTGGGATTCTCGCCTATTCAATTATGGGAGTTGGGAA                         GTTTTGAGATTTCTATTGTCAAATGCGAGATGGTGGCTTGAAGAATATAAA
genomic: GCCATCATTGGATGTGGGATTCTCGCCTATTCAATTATGGGAGTTGGGAAgtatgtcatg ... ttttgtgcagGTTTTGAGATTTCTATTGTCAAATGCGAGATGGTGGCTTGAAGAATATAAA