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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCCCTCTTGGGAGCCGAGCTGCTAAGGCAATTGGATTTATTGAGAAGATGATAGAGTACTCATATGTTAATGCACCATTGCAGAAGGAGCTGTTGGCTGgtcagagttttgactcctccctttgttacttgtgacttgctgtttcatccccctatttgaaaggtggcaacctttttcttcacagtgctctcttttttcttaacaagtatgctcttgttgaacag

Basic information

species Zea mays
transcript GRMZM2G070422_T01
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G070422_T03 (Zea mays), 5'ss of exon 11
lower sequence: LOC_Os08g23810.1 (Oryza sativa), 5'ss of exon 12
GCCCTCTTGGGAGCCGAGCTGCTAAGGCAATTGGATTTATTGAGAAGATGATAGAGTACTCATATGTTAATGCACCATTGCAGAAGGAGCTGTTGGCTGgtcagagttttgactcctccctttgttacttgtgacttgctgtttcatccccctatttgaaaggtggcaacctttttcttcacagtgctctcttttttcttaacaagtatgctct-tgttgaacag
| ||| | || ||||||||||| |||||||||||||| ||||||||||||||||| ||||| |||||||||||||| |||||||| || |||||||| ||||  |     | ||  |  || |||||| | || |||  |||||        ||||| ||||    ||||  ||||| ||    |   ||||           ||| ||  | | ||| ||||||
GTCCTTTGGGAAGCCGAGCTGCCAAGGCAATTGGATTCATTGAGAAGATGATAGAATACTCTTATGTTAATGCACCGTTGCAGAAAGAACTGTTGGCAGgtccaaaacc-gccttatttctctgttacatatg-cttcttgttt--------tatttaaaaga--acaac--ttttcatccagatatactctaac------gaaagcattttgtatgtcgaacag

upper sequence: GRMZM2G070422_T03 (Zea mays), 5'ss of exon 11
lower sequence: PP1S29_256V6.2 (Physcomitrella patens), 5'ss of exon 12
GCCCTCTTGGGAGCCGAGCTGCTAAGGCAATTGGATTTATTGAGAAGATGATAGAGTACTCATATGTTAATGCACCATTGCAGAAGGAGCTGTTGGCTGgtcagagttttgactcctccctttgttacttgtgacttgctgtttcatccccctatttgaaaggtggcaacctttttcttcacagtgctctcttttttcttaacaagtatgctcttgttgaacag-----------------------------------------------------------------------
| ||  |    ||| |||| |||||||| ||||| ||||||||  | |||||  | ||||| | || ||||||||||||||| |||||||||   || ||| ||  |  | | |      | |||||  |  | ||    |||   || |  || |  |  | || ||| | |    |  | ||| | ||     || |  ||| ||  |  |||||| ||                                                                          
GTCCCTTGAAAAGCAGAGCGGCTAAGGCTATTGGTTTTATTGATGACATGATCAACTACTCCTCTGCTAATGCACCATTGCAAAAGGAGCTGGAAGCAGgtgaggttgataattatg--ttgtgttatatcaggctcttcgtt--gtctcaataatgcagggttgacaatcctcaa-tggaaagtacacttcacattttatacacgtcaga-cttgtttaatgctgtttgaaccttcctctttctctgttttcaagtctattctgacaatatcactatcgtgtgttgatgtacag

upper sequence: GRMZM2G070422_T03 (Zea mays), 5'ss of exon 11
lower sequence: EFJ10940 (Selaginella moellendorffii), 5'ss of exon 10
GCCCTCTTGGGAGCCGAGCTGCTAAGGCAATTGGATTTATTGAGAAGATGATAGAGTACTCATATGTTAATGCACCATTGCAGAAGGAGCTGTTGGCTGgtcagagttttgactcctccctttgttacttgtgacttgctgtttcatccccctatttgaaaggtggcaacctttttcttcacagtgctctcttttttcttaacaagtatgctcttgttgaacag
| ||  |    ||| ||||||| |||||||| ||||| |||||||||||||| || |||||  | |  ||  | ||  |||| |  || ||    ||||||  | |||   |    |  ||| | |   | ||  |||||     |   | |||| |             || |||   |||||                                        
GTCCCTTGAAAAGCAGAGCTGCCAAGGCAATCGGATTCATTGAGAAGATGATCGATTACTCCAAGGCAAACTCTCCCCTGCAAAGAGATCTCGAAGCTGgt--gcgttaaaaactttggcttggcttgct-tggtttgct----tacttcgctatata------------ctcttttcgcacag----------------------------------------

upper sequence: GRMZM2G070422_T03 (Zea mays), 5'ss of exon 11
lower sequence: EFJ25882 (Selaginella moellendorffii), 5'ss of exon 10
GCCCTCTTGGGAGCCGAGCTGCTAAGGCAATTGGATTTATTGAGAAGATGATAGAGTACTCATATGTTAATGCACCATTGCAGAAGGAGCTGTTGGCTGgtcagagttttgactcctccctttgttacttgtgacttgctgtttcatccccctatttgaaaggtggcaacctttttcttcacagtgctctcttttttcttaacaagtatgctcttgttgaacag
| ||  |    ||| ||||||| |||||||| ||||| |||||||||||||| || |||||  | |  ||| | ||  |||| |  || ||    ||||||    |||   |    |  ||| | |   | ||  |||||     |   | |||| |             || |||   |||||                                        
GTCCCTTGAAAAGCAGAGCTGCCAAGGCAATCGGATTCATTGAGAAGATGATCGATTACTCCAAGGCAAATTCTCCCCTGCAAAGAGATCTCGAAGCTGgt--acgttcaaaactttggcttggcttgct-tggtttgct----tacttcgctatata------------ctcttttcgcacag----------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67015153|gb|CO443902.1|CO443902
EST:     GATAGAGTACTCATATGTTAATGCACCATTGCAGAAGGAGCTGTTGGCTG                         ATGAGGTGGGGAACACAGCTGCATTCCTGGTTTCTTCATTGGCTTCTGCCA
genomic: GATAGAGTACTCATATGTTAATGCACCATTGCAGAAGGAGCTGTTGGCTGgtcagagttt ... tgttgaacagATGAGGTGGGGAACACAGCTGCATTCCTGGTTTCTTCATTGGCTTCTGCCA
EST: gi|32864419|gb|CF004101.1|CF004101
EST:     GATAGAGTACTCATATGTTAATGCACCATTGCAGAAGGAGCTGTTGGCTG                         ATGAGGTGGGGAACACAGCTGCATTCCTGGTTTCTTCATTGGCTTCTGCCA
genomic: GATAGAGTACTCATATGTTAATGCACCATTGCAGAAGGAGCTGTTGGCTGgtcagagttt ... tgttgaacagATGAGGTGGGGAACACAGCTGCATTCCTGGTTTCTTCATTGGCTTCTGCCA
EST: gi|7145508|gb|AW506989.1|AW506989
EST:     GATAGAGTACTCATATGTTAATGCCCCATTGCAGAAGGAGCTGTTGGCTG                         ATGAGGTGGTGAACACAGCTGCATTCCTGGTTTCTTCATTGGCTTCTGCCA
genomic: GATAGAGTACTCATATGTTAATGCACCATTGCAGAAGGAGCTGTTGGCTGgtcagagttt ... tgttgaacagATGAGGTGGGGAACACAGCTGCATTCCTGGTTTCTTCATTGGCTTCTGCCA
EST: gi|211297572|gb|FL439289.1|FL439289
EST:     GATAGAGTACTCATATGTTAATGCACCATTGCAGAAGGAGCTGTTGGCTG                         ATGAGGTGGGGAACACAGCTGCATTCCTGGTTTCTTCATTGGCTTCTGCCA
genomic: GATAGAGTACTCATATGTTAATGCACCATTGCAGAAGGAGCTGTTGGCTGgtcagagttt ... tgttgaacagATGAGGTGGGGAACACAGCTGCATTCCTGGTTTCTTCATTGGCTTCTGCCA
EST: gi|31364152|gb|CD448507.1|CD448507
EST:     GATAGAGTACTCATATGTTAATGCACCATTGCAGAAGGAGCTGTTGGCTG                         ATGAGGTGGGGAACACAGCTGCATTCCTGGTTTCTTCATTGGCTTCTGCCA
genomic: GATAGAGTACTCATATGTTAATGCACCATTGCAGAAGGAGCTGTTGGCTGgtcagagttt ... tgttgaacagATGAGGTGGGGAACACAGCTGCATTCCTGGTTTCTTCATTGGCTTCTGCCA
EST: gi|67015181|gb|CO443930.1|CO443930
EST:     GATAGAGTACTCATATGTTAATGCACCATTGCAGAAGGAGCTGTTGGCTG                         ATGAGGTGGGGAACACAGCTGCATTCCTGGTTTCTTCATTGGCTTCTGCCA
genomic: GATAGAGTACTCATATGTTAATGCACCATTGCAGAAGGAGCTGTTGGCTGgtcagagttt ... tgttgaacagATGAGGTGGGGAACACAGCTGCATTCCTGGTTTCTTCATTGGCTTCTGCCA
EST: gi|60345014|gb|DN211987.1|DN211987
EST:     GATAGAGTACTCATATGTTAATGCACCATTGCAGAAGGAGCTGTTGGCTG                         ATGAGGTGGGGAACACAGCTGCATTCCTGGTTTCTTCATTGGCTTCTGCCA
genomic: GATAGAGTACTCATATGTTAATGCACCATTGCAGAAGGAGCTGTTGGCTGgtcagagttt ... tgttgaacagATGAGGTGGGGAACACAGCTGCATTCCTGGTTTCTTCATTGGCTTCTGCCA
EST: gi|7145192|gb|AW506673.1|AW506673
EST:     GATAGAGTACTCATATGTTAATGCACCATTGCAGAAGGAGCTGTTGGCTG                         ATGAGGTGGGGAACACAGCTGCATTCCTGGTTTCTTCATTGGCTTCTGCCA
genomic: GATAGAGTACTCATATGTTAATGCACCATTGCAGAAGGAGCTGTTGGCTGgtcagagttt ... tgttgaacagATGAGGTGGGGAACACAGCTGCATTCCTGGTTTCTTCATTGGCTTCTGCCA
EST: gi|32933638|gb|CF038450.1|CF038450
EST:     ACTCATATGTTAATGCACCATTGCAGAAGGAGCTGTTGGCTG                         ATGAGGTGGGGAACCACAGCTGCATTCCTGGTTTCTTCATTGGCTTCTGCC
genomic: ACTCATATGTTAATGCACCATTGCAGAAGGAGCTGTTGGCTGgtcagagttt ... tgttgaacagATGAGGTGGGGAA-CACAGCTGCATTCCTGGTTTCTTCATTGGCTTCTGCC
EST: gi|31357208|gb|CD441565.1|CD441565
EST:     GATAGAGTACTCATATGTTAATGCACCATTGCAGAAGGAGCTGTTGGCTG                         ATGAGGTGGGGAACACAGCTGCATTCCTGGTTTCTTCATTGGCTTCTGCCA
genomic: GATAGAGTACTCATATGTTAATGCACCATTGCAGAAGGAGCTGTTGGCTGgtcagagttt ... tgttgaacagATGAGGTGGGGAACACAGCTGCATTCCTGGTTTCTTCATTGGCTTCTGCCA
EST: gi|24768563|gb|CA403692.1|CA403692
EST:     GATAGAGTACTCATATGTTAATGCACCATTGCAGAAGGAGCTGTTGGCTG                         ATGAGGTGGGGAACACAGCTGCATTCCTGGTTTCTTCATTGGCTTCTGCCA
genomic: GATAGAGTACTCATATGTTAATGCACCATTGCAGAAGGAGCTGTTGGCTGgtcagagttt ... tgttgaacagATGAGGTGGGGAACACAGCTGCATTCCTGGTTTCTTCATTGGCTTCTGCCA
EST: gi|211078513|gb|FL462572.1|FL462572
EST:     GATAGAGTACTCATATGTTAATGCACCATTGCAGAAGGAGCTGTTGGCTG                         ATGAGGTGGGGAACACAGCTGCATTCCTGGTTTCTTCATTGGCTTCTGCCA
genomic: GATAGAGTACTCATATGTTAATGCACCATTGCAGAAGGAGCTGTTGGCTGgtcagagttt ... tgttgaacagATGAGGTGGGGAACACAGCTGCATTCCTGGTTTCTTCATTGGCTTCTGCCA
EST: gi|32907864|gb|CF012677.1|CF012677
EST:     GATAGAGTACTCATATGTTAATGCCCCATTGCAGAAGGAGCTGTTGGCTG                         ATTAGGTGGGGAACACAGCTGCATTCCTGGTTTCTTCATTGGCTTCTGCCA
genomic: GATAGAGTACTCATATGTTAATGCACCATTGCAGAAGGAGCTGTTGGCTGgtcagagttt ... tgttgaacagATGAGGTGGGGAACACAGCTGCATTCCTGGTTTCTTCATTGGCTTCTGCCA
EST: gi|31362224|gb|CD446581.1|CD446581
EST:     GATAGAGTACTCATATGTTAATGCACCATTGCAGAAGGAGCTGTTGGCTG                         ATGAGGTGGGGAACACAGCTGCATTCCTGGTTTCTTCATTGGCTTCTGCCA
genomic: GATAGAGTACTCATATGTTAATGCACCATTGCAGAAGGAGCTGTTGGCTGgtcagagttt ... tgttgaacagATGAGGTGGGGAACACAGCTGCATTCCTGGTTTCTTCATTGGCTTCTGCCA
EST: gi|67042246|gb|CO468501.1|CO468501
EST:     GATAGAGTACTCATATGTTAATGCACCATTGCAAAANGAGCTGTTGGCTG                         ATGANGTGGGGAACACAGCTGCATTCCTGGTTTCTTCATTGGCTTCTNGC-
genomic: GATAGAGTACTCATATGTTAATGCACCATTGCAGAAGGAGCTGTTGGCTGgtcagagttt ... tgttgaacagATGAGGTGGGGAACACAGCTGCATTCCTGGTTTCTTCATTGGCTTCT-GCC
EST: gi|116819942|gb|EC863109.1|EC863109
EST:     GATAGAGTACTCATATGTTAATGCACCATTGCAGAAGGAGCTGTTGGCTG                         ATGAGGTGGGGAACACAGCTGCATTCCTGGTTTCTTCATTGGCTTCTGCCA
genomic: GATAGAGTACTCATATGTTAATGCACCATTGCAGAAGGAGCTGTTGGCTGgtcagagttt ... tgttgaacagATGAGGTGGGGAACACAGCTGCATTCCTGGTTTCTTCATTGGCTTCTGCCA
EST: gi|9254230|gb|BE344698.1|BE344698
EST:     GATAGAGTACTCATATGTTAATGCACCATTGCAGAAGGAGCTGTTGGCTG                         ATGAGGTGGGGAACACAGCTGCATTCCTGGTTTCTTCATTGGCTTCTGCCA
genomic: GATAGAGTACTCATATGTTAATGCACCATTGCAGAAGGAGCTGTTGGCTGgtcagagttt ... tgttgaacagATGAGGTGGGGAACACAGCTGCATTCCTGGTTTCTTCATTGGCTTCTGCCA
EST: gi|14191336|gb|BG833566.1|BG833566
EST:     ACTCATATGTTAATGCACCATTGCAGAAGGAGCTGTTGGCTG                         ATGAGGTGGGGAAC-CAGCTGCATTCCTGGTTTCTTCATTGGCTTCTGCCA
genomic: ACTCATATGTTAATGCACCATTGCAGAAGGAGCTGTTGGCTGgtcagagttt ... tgttgaacagATGAGGTGGGGAACACAGCTGCATTCCTGGTTTCTTCATTGGCTTCTGCCA
EST: gi|16926451|gb|BM079519.1|BM079519
EST:     GCAGAAGGAGCTGTTGGCTG                         ATGAGGTGGGGAACACAGCTGCATTCCTGGTTTCTTCATTGGCTTCTGCCA
genomic: GCAGAAGGAGCTGTTGGCTGgtcagagttt ... tgttgaacagATGAGGTGGGGAACACAGCTGCATTCCTGGTTTCTTCATTGGCTTCTGCCA
EST: gi|33101843|gb|CF061803.1|CF061803
EST:     GTACTCATATGTTAATGCACCATTGCAGAAGGAGCTGTTGGCTG                         ATGAGGTGGGGAACACAGCTGCATTCCTGGTTTCTTCATTGGCTTCTGCCA
genomic: GTACTCATATGTTAATGCACCATTGCAGAAGGAGCTGTTGGCTGgtcagagttt ... tgttgaacagATGAGGTGGGGAACACAGCTGCATTCCTGGTTTCTTCATTGGCTTCTGCCA
EST: gi|7216968|gb|AW563090.1|AW563090
EST:     ACTCATATGTTAATGCACCATTGCAGAAGGAGCTGTTGGCTG                         ATGAGGTGGGGAACACAGCTGCATTCCTGGTTTCTTCATTGGCTTCTGCCA
genomic: ACTCATATGTTAATGCACCATTGCAGAAGGAGCTGTTGGCTGgtcagagttt ... tgttgaacagATGAGGTGGGGAACACAGCTGCATTCCTGGTTTCTTCATTGGCTTCTGCCA
EST: gi|7216969|gb|AW563091.1|AW563091
EST:     ACTCATATGTTAATGCACCATTGCAGAAGGAGCTGTTGGCTG                         ATGAGGTGGGGAACACAGCTGCATTCCTGGTTTCTTCATTGGCTTCTGCCA
genomic: ACTCATATGTTAATGCACCATTGCAGAAGGAGCTGTTGGCTGgtcagagttt ... tgttgaacagATGAGGTGGGGAACACAGCTGCATTCCTGGTTTCTTCATTGGCTTCTGCCA
EST: gi|211104013|gb|FL460612.1|FL460612
EST:     GATAGAGTACTCATATGTTAATGCACCATTGCAGAAGGAGCTGTTGGCTG                         ATGAGGTGGGGAACACAGCTGCATTCCTGGTTTCTTCATTGGCTTCTGCCA
genomic: GATAGAGTACTCATATGTTAATGCACCATTGCAGAAGGAGCTGTTGGCTGgtcagagttt ... tgttgaacagATGAGGTGGGGAACACAGCTGCATTCCTGGTTTCTTCATTGGCTTCTGCCA
EST: gi|32935670|gb|CF040482.1|CF040482
EST:     GATAGAGTACTCATATGTTAATGCACCATTGCAGAAGGAGCTGTTGGCTG                         ATGAGGTGGGGAACACAGCTGCATTCCTGGTTTCTTCATTGGCTTCTGCCA
genomic: GATAGAGTACTCATATGTTAATGCACCATTGCAGAAGGAGCTGTTGGCTGgtcagagttt ... tgttgaacagATGAGGTGGGGAACACAGCTGCATTCCTGGTTTCTTCATTGGCTTCTGCCA
EST: gi|9254476|gb|BE344944.1|BE344944
EST:     GATAGAGTACTCATATGTTAATGCACCATTGCAGAAGGAGCTGTTGGCTG                         ATGAGGTGGGGAACACAGCTGCATTCCTGGTTTCTTCATTGGCTTCTGCCA
genomic: GATAGAGTACTCATATGTTAATGCACCATTGCAGAAGGAGCTGTTGGCTGgtcagagttt ... tgttgaacagATGAGGTGGGGAACACAGCTGCATTCCTGGTTTCTTCATTGGCTTCTGCCA
EST: gi|31364652|gb|CD449007.1|CD449007
EST:     GATAGAGTACTCATATGTTAATGCACCATTGCAGAAGGAGCTGTTGGCTG                         ATGAGGTGGGGAACACAGCTGCATTCCTGGTTTCTTCATTGGCTTCTGCCA
genomic: GATAGAGTACTCATATGTTAATGCACCATTGCAGAAGGAGCTGTTGGCTGgtcagagttt ... tgttgaacagATGAGGTGGGGAACACAGCTGCATTCCTGGTTTCTTCATTGGCTTCTGCCA
EST: gi|32908049|gb|CF012862.1|CF012862
EST:     GATAGAGTACTCATATGTTAATGCACCATTGCAGAAGGAGCTGTTGGCTG                         ATGAGGTGGGGAACACAACTGCATTCCTGGTTTCTTCATTGGCTTCTGCCA
genomic: GATAGAGTACTCATATGTTAATGCACCATTGCAGAAGGAGCTGTTGGCTGgtcagagttt ... tgttgaacagATGAGGTGGGGAACACAGCTGCATTCCTGGTTTCTTCATTGGCTTCTGCCA
EST: gi|211497962|gb|FL450082.1|FL450082
EST:     GATAGAGTACTCATATGTTAATGCACCATTGCAGAAGGAGCTGTTGGCTG                         ATGAGGTGGGGAACACAGCTGCATTCCTGGTTTCTTCATTGGCTTCTGCCA
genomic: GATAGAGTACTCATATGTTAATGCACCATTGCAGAAGGAGCTGTTGGCTGgtcagagttt ... tgttgaacagATGAGGTGGGGAACACAGCTGCATTCCTGGTTTCTTCATTGGCTTCTGCCA
EST: gi|6012366|gb|AW061722.1|AW061722
EST:     GGAGCTGTTGGCTG                         ATAAGGTGGGGAACACAGCTGCATTCCTGGTTTTTTCATTGGCTTTTGCCA
genomic: GGAGCTGTTGGCTGgtcagagttt ... tgttgaacagATGAGGTGGGGAACACAGCTGCATTCCTGGTTTCTTCATTGGCTTCTGCCA
EST: gi|211375763|gb|FL457930.1|FL457930
EST:     GATAGAGTACTCATATGTTAATGCACCATTGCAGAAGGAGCTGTTGGCTG                         ATGAGGTGGGGAACACAGCTGCATTCCTGGTTTCTTCATTGGCTTCTGCCA
genomic: GATAGAGTACTCATATGTTAATGCACCATTGCAGAAGGAGCTGTTGGCTGgtcagagttt ... tgttgaacagATGAGGTGGGGAACACAGCTGCATTCCTGGTTTCTTCATTGGCTTCTGCCA
EST: gi|211104012|gb|FL460611.1|FL460611
EST:     GATAGAGTACTCATATGTTAATGCACCATTGCAGAAGGAGCTGTTGGCTG                         ATGAGGTGGGGAACACAGCTGCATTCCTGGTTTCTTCATTGGCTTCTGCCA
genomic: GATAGAGTACTCATATGTTAATGCACCATTGCAGAAGGAGCTGTTGGCTGgtcagagttt ... tgttgaacagATGAGGTGGGGAACACAGCTGCATTCCTGGTTTCTTCATTGGCTTCTGCCA
EST: gi|71766308|gb|DR964245.1|DR964245
EST:     GATAGAGTACTCATATGTTAATGCACCATTGCAGAAGGAGCTGTTGGCTG                         ATGAGGTGGGGAACACAGCTGCATTCCTGGTTTCTTCATTGGCTTCTGCCA
genomic: GATAGAGTACTCATATGTTAATGCACCATTGCAGAAGGAGCTGTTGGCTGgtcagagttt ... tgttgaacagATGAGGTGGGGAACACAGCTGCATTCCTGGTTTCTTCATTGGCTTCTGCCA
EST: gi|6827701|gb|AW331344.1|AW331344
EST:     GAAGGAGCTGTTGGCTG                         ATGAGGTGGGGAACACAGCTGCATTCCTGGTTTCTTCATTGGCTTCTGCCA
genomic: GAAGGAGCTGTTGGCTGgtcagagttt ... tgttgaacagATGAGGTGGGGAACACAGCTGCATTCCTGGTTTCTTCATTGGCTTCTGCCA
EST: gi|7145191|gb|AW506672.1|AW506672
EST:     GATAGAGTACTCATATGTTAATGCACCATTGCAGAAGGAGCTGTTGGCTG                         ATGAGGTGGGGAACACAGCTGCATTCCTGGTTTCTTCATTGGCTTCTGCCA
genomic: GATAGAGTACTCATATGTTAATGCACCATTGCAGAAGGAGCTGTTGGCTGgtcagagttt ... tgttgaacagATGAGGTGGGGAACACAGCTGCATTCCTGGTTTCTTCATTGGCTTCTGCCA
EST: gi|60399474|gb|DN232286.1|DN232286
EST:     GATAGAGTACTCATATGTTAATGCACCATTGCAGAAGGAGCTGTTGGCTG                         ATGAGGTGGGGAACACAGCTGCATTCCTGGTTTCTTCATTGGCTTCTGCCA
genomic: GATAGAGTACTCATATGTTAATGCACCATTGCAGAAGGAGCTGTTGGCTGgtcagagttt ... tgttgaacagATGAGGTGGGGAACACAGCTGCATTCCTGGTTTCTTCATTGGCTTCTGCCA
EST: gi|67022814|gb|CO451563.1|CO451563
EST:     GATAGAGTACTCATATGTTAATGCACCATTGCAGAAGGAGCTGTTGGCTG                         ATGAGGTGGGGAACACAGCTGCATTCCTGGTTTCTTCATTGGCTTCTGCCA
genomic: GATAGAGTACTCATATGTTAATGCACCATTGCAGAAGGAGCTGTTGGCTGgtcagagttt ... tgttgaacagATGAGGTGGGGAACACAGCTGCATTCCTGGTTTCTTCATTGGCTTCTGCCA
EST: gi|13150169|gb|BG320491.1|BG320491
EST:     GATAGAGTACTCATATGTTAATGCACCATTGCAGAAGGAGCTGTTGGCTG                         ATGAGGTGGGGAACACAGCTGCATTCCTGGTTTCTTCATTGGCTTCTGCCA
genomic: GATAGAGTACTCATATGTTAATGCACCATTGCAGAAGGAGCTGTTGGCTGgtcagagttt ... tgttgaacagATGAGGTGGGGAACACAGCTGCATTCCTGGTTTCTTCATTGGCTTCTGCCA
EST: gi|211497961|gb|FL450081.1|FL450081
EST:     GATAGAGTACTCATATGTTAATGCACCATTGCAGAAGGAGCTGTTGGCTG                         ATGAGGTGGGGAACACAGCTGCATTCCTGGTTTCTTCATTGGCTTCTGCCA
genomic: GATAGAGTACTCATATGTTAATGCACCATTGCAGAAGGAGCTGTTGGCTGgtcagagttt ... tgttgaacagATGAGGTGGGGAACACAGCTGCATTCCTGGTTTCTTCATTGGCTTCTGCCA
EST: gi|211373107|gb|FL457929.1|FL457929
EST:     GATAGAGTACTCATATGTTAATGCACCATTGCAGAAGGAGCTGTTGGCTG                         ATGAGGTGGGGAACACAGCTGCATTCCTGGTTTCTTCATTGGCTTCTGCCA
genomic: GATAGAGTACTCATATGTTAATGCACCATTGCAGAAGGAGCTGTTGGCTGgtcagagttt ... tgttgaacagATGAGGTGGGGAACACAGCTGCATTCCTGGTTTCTTCATTGGCTTCTGCCA
EST: gi|6466754|gb|AW191414.1|AW191414
EST:     GATAGAGTACTCATATGTTAATGCACCATTGCAGAAGGAGCTGTTGGCTG                         ATGAGGTGGGGAACACAGCTGCATTCCTGGTTTCTTCATTGGCTTCTGCCA
genomic: GATAGAGTACTCATATGTTAATGCACCATTGCAGAAGGAGCTGTTGGCTGgtcagagttt ... tgttgaacagATGAGGTGGGGAACACAGCTGCATTCCTGGTTTCTTCATTGGCTTCTGCCA
EST: gi|6526806|gb|AW216075.1|AW216075
EST:     GATAGAGTACTCATATGTTAATGCACCATTGCAAAAGGAGCTGTTGGCTG                         ATGAGGTGGGGAACACAGCTGCATTCCTGGTTTCTTCATTGGCTTCTGCCA
genomic: GATAGAGTACTCATATGTTAATGCACCATTGCAGAAGGAGCTGTTGGCTGgtcagagttt ... tgttgaacagATGAGGTGGGGAACACAGCTGCATTCCTGGTTTCTTCATTGGCTTCTGCCA
EST: gi|44901425|gb|CK827970.1|CK827970
EST:     GATAGAGTACTCATATGTTAATGCACCATTGCAGAAGGAGCTGTTGGCTG                         ATGAGGTGGGGAACACAGCTGCATTCCTGGTTTCTTCATTGGCTTCTGCCA
genomic: GATAGAGTACTCATATGTTAATGCACCATTGCAGAAGGAGCTGTTGGCTGgtcagagttt ... tgttgaacagATGAGGTGGGGAACACAGCTGCATTCCTGGTTTCTTCATTGGCTTCTGCCA
EST: gi|29544932|gb|CB605540.1|CB605540
EST:     GATAGAGTACTCATATGTTAATGCACCATTGCAGAAGGAGCTGTTGGCTG                         ATGAGGTGGGGAACACAGCTGCATTCCTGGTTTCTTCATTGGCTTCTGCCA
genomic: GATAGAGTACTCATATGTTAATGCACCATTGCAGAAGGAGCTGTTGGCTGgtcagagttt ... tgttgaacagATGAGGTGGGGAACACAGCTGCATTCCTGGTTTCTTCATTGGCTTCTGCCA
EST: gi|32908050|gb|CF012863.1|CF012863
EST:     GATAGAGTACTCATATGTTAATGCACCATTGCAGAAGGAGCTGTTGGCTG                         ATGAGGTGGGG
genomic: GATAGAGTACTCATATGTTAATGCACCATTGCAGAAGGAGCTGTTGGCTGgtcagagttt ... tgttgaacagATGAGGTGGGG
EST: gi|32907865|gb|CF012678.1|CF012678
EST:     GATAGAGTACTCATATGTTAATGCACCATTGCAGAAGGAGCTGTTGGCTG                         ATGAGGTGGGGAACACAGCTGCATTCCTGGTTTCTTCATTGGCTTCTGCCA
genomic: GATAGAGTACTCATATGTTAATGCACCATTGCAGAAGGAGCTGTTGGCTGgtcagagttt ... tgttgaacagATGAGGTGGGGAACACAGCTGCATTCCTGGTTTCTTCATTGGCTTCTGCCA
EST: gi|32933113|gb|CF037925.1|CF037925
EST:     ACTCATATGTTAATGCACCATTGCAGAAGGAGCTGTTGGCTG                         ATGAGGTGGGGAACACAGCCGCATTCCTGGTTTCTTCATTGGTTTCTGCCA
genomic: ACTCATATGTTAATGCACCATTGCAGAAGGAGCTGTTGGCTGgtcagagttt ... tgttgaacagATGAGGTGGGGAACACAGCTGCATTCCTGGTTTCTTCATTGGCTTCTGCCA
EST: gi|7145190|gb|AW506671.1|AW506671
EST:     GATAGAGTACTCATATGTTAATGCACCATTGCAGAAGGAGCTGTTGGCTG                         ATGAGGTGGGGAACACAGCTGCATTCCTGGTTTCTTCATTGGACTTCTGCC
genomic: GATAGAGTACTCATATGTTAATGCACCATTGCAGAAGGAGCTGTTGGCTGgtcagagttt ... tgttgaacagATGAGGTGGGGAACACAGCTGCATTCCTGGTTTCTTCATTGG-CTTCTGCC
EST: gi|211297571|gb|FL439288.1|FL439288
EST:     GATAGAGTACTCATATGTTAATGCACCATTGCAGAAGGAGCTGTTGGCTG                         ATGAGGTGGGGAACACAGCTGCATTCCTGGTTTCTTCATTGGCTTCTGCCA
genomic: GATAGAGTACTCATATGTTAATGCACCATTGCAGAAGGAGCTGTTGGCTGgtcagagttt ... tgttgaacagATGAGGTGGGGAACACAGCTGCATTCCTGGTTTCTTCATTGGCTTCTGCCA
EST: gi|116826086|gb|EC869836.1|EC869836
EST:     GATAGAGTACTCATATGTTAATGCACCATTGCAGAAGGAGCTGTTGGCTG                         ATGAGGTGGGGAACACAGCTGCATTCCTGGTTTCTTCATTGGCTTCTGCCA
genomic: GATAGAGTACTCATATGTTAATGCACCATTGCAGAAGGAGCTGTTGGCTGgtcagagttt ... tgttgaacagATGAGGTGGGGAACACAGCTGCATTCCTGGTTTCTTCATTGGCTTCTGCCA
EST: gi|6057037|gb|AW091442.1|AW091442
EST:     GATAGAGTACTCATATGTTAATGCACCATTGCAGAAGGAGCTGTTGGCTG                         ATGAGGTGGGGAACACAGCTGCATTCCTGGTTTCTTCATTGGCTTCTGCCA
genomic: GATAGAGTACTCATATGTTAATGCACCATTGCAGAAGGAGCTGTTGGCTGgtcagagttt ... tgttgaacagATGAGGTGGGGAACACAGCTGCATTCCTGGTTTCTTCATTGGCTTCTGCCA
EST: gi|6564253|gb|AW231875.1|AW231875
EST:     GATAGAGTACTCATATGTTAATGCACCATTGCAGAAGGAGCTGTTGGCTG                         ATGAGGTGGGGAACACAGCTGCATTCCTGGTTTCTTCATTGGCTTCTGCCA
genomic: GATAGAGTACTCATATGTTAATGCACCATTGCAGAAGGAGCTGTTGGCTGgtcagagttt ... tgttgaacagATGAGGTGGGGAACACAGCTGCATTCCTGGTTTCTTCATTGGCTTCTGCCA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GCCCTCTTGGGAGCCGAGCTGCTAAGGCAATTGGATTTATTGAGAAGATGATAGAGTACTCATATGTTAATGCACCATTGCAGAAGGAGCTGTTGGCTGgtcagagttttgactcctccctttgttacttgtgacttgctgtttcatccccctatttgaaaggtggcaacctttttcttcacagtgctctcttttttcttaacaagtatgctcttgttgaacag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT