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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGGGAAGCATCACCGTTTCAAACGAGGGTACAAGAATGTAATAGACGAGGCTATTCGTCTGgttagtttacactttctatgtaatttagtccctggatttccctccttaatttttccagacgaatatgggaatatttttccatattcgtctggttcgtctg...

Basic information

species Zea mays
transcript GRMZM2G069676_T02
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G069676_T02 (Zea mays), 5'ss of exon 12
lower sequence: LOC_Os07g26610.1 (Oryza sativa), 5'ss of exon 13
GAGGGAAGCATCACCGTTTCAAACGAGGGTACAAGAATGTAATAGACGAGGCTATTCGTCTGgttagtttacactttctatgtaatttag--tccctggatttccctccttaatttttccagacgaatatgggaatatttttccatattcgtctggttcgtctg
||||||||||||| |||||||| ||||||||||||||||||||||| |||||||||||||||||||||||  |||   | | ||||| ||  |  || ||  |   | || | ||   |  |  |||||       | |  | | |  ||      |  |    
GAGGGAAGCATCATCGTTTCAAGCGAGGGTACAAGAATGTAATAGATGAGGCTATTCGTCTGgttagtttgtactgattgtataattcagattgtcttgaaatttgttct-atttcacctggctgaataaaatgtaagtcattcctggtcaatctttcag----

upper sequence: GRMZM2G069676_T02 (Zea mays), 5'ss of exon 12
lower sequence: AT5G17530.3 (Arabidopsis thaliana), 5'ss of exon 13
GAGGGAAGCATCACCGTTTCAAACGAGGGTACAAGAATGTAATAGACGAGGCTATTCGTCTGgtta-----gtttacactttctatgtaatttagtccctggatttccctccttaatttttccagacgaatatgggaatatttttccatattcgtctggttcgtctg
| || ||||||||| | |||||| |||| ||||||||||| || ||||| ||||||||  |||| |     | |   |  ||    | | |   |   | |            | |  | ||   |    | |  |||| |  | |  |||      |  | |    
GCGGAAAGCATCACAGGTTCAAAAGAGGTTACAAGAATGTCATTGACGAAGCTATTCGCTTGgtaataaatgatcgtatctttcgagaactcatgcttcggagccaattgttgttagctatcttaagttgtgttagaat-tgatacagtatctaaaagtgttg----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211441851|gb|FL182588.1|FL182588
EST:     ACCGTTTCAAACGAGGGTACAAGAATGTAATAGACGAGGCTATTCGTCTG                         AACTCTATTGGTGAGGAGTCACATTTGGCCATGGAAACAAGTGGGCATGGA
genomic: ACCGTTTCAAACGAGGGTACAAGAATGTAATAGACGAGGCTATTCGTCTGgttagtttac ... aaattttcagAACTCTATTGGTGAGGAGTCACATTTGGCCATGGAAACAAGTGGGCATGGA
EST: gi|60341753|gb|DN208726.1|DN208726
EST:     ACCGTTTCAAACGAGGGTACAAGAATGTAATAGACGAGGCTATTCGTCTG                         AACTCTATTGGTGAGGAGTCACATTTGGCCATGGAAACAAGTGGGCATGGA
genomic: ACCGTTTCAAACGAGGGTACAAGAATGTAATAGACGAGGCTATTCGTCTGgttagtttac ... aaattttcagAACTCTATTGGTGAGGAGTCACATTTGGCCATGGAAACAAGTGGGCATGGA
EST: gi|20512826|gb|BQ280024.1|BQ280024
EST:     ACCGTTTCAAACGAGGGTACAAGAATGTAAGAGACGAGGCTATTCGTCTG                         AACTCTATTGGTGAGGAGTCACATTTGGCCATGGAAACAAGTGGGCATGGA
genomic: ACCGTTTCAAACGAGGGTACAAGAATGTAATAGACGAGGCTATTCGTCTGgttagtttac ... aaattttcagAACTCTATTGGTGAGGAGTCACATTTGGCCATGGAAACAAGTGGGCATGGA
EST: gi|32928442|gb|CF033254.1|CF033254
EST:     ACAAGAATGTAATAGACGAGGCTATTCGTCTG                         AACTCTATTGGTGAGGAGTCACATTTGGCCATGGAAACAAGTGCGCATGGA
genomic: ACAAGAATGTAATAGACGAGGCTATTCGTCTGgttagtttac ... aaattttcagAACTCTATTGGTGAGGAGTCACATTTGGCCATGGAAACAAGTGGGCATGGA
EST: gi|32928208|gb|CF033020.1|CF033020
EST:     ACAAGAATGTAATAGACGAGGCTATTCGTCTG                         AACTCTATTGGTGAGGAGTCACATTTGGCCATGGAAACAAGTGGGCATGGA
genomic: ACAAGAATGTAATAGACGAGGCTATTCGTCTGgttagtttac ... aaattttcagAACTCTATTGGTGAGGAGTCACATTTGGCCATGGAAACAAGTGGGCATGGA
EST: gi|32929540|gb|CF034352.1|CF034352
EST:     ACAAGAATGTAATAGACGAGGCTATTCGTCTG                         AACTCTATTGGTGAGGAGTCACATTTGGCCATGGAAACAAGTGGGCATGGA
genomic: ACAAGAATGTAATAGACGAGGCTATTCGTCTGgttagtttac ... aaattttcagAACTCTATTGGTGAGGAGTCACATTTGGCCATGGAAACAAGTGGGCATGGA