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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTCGGTCAATGGTCAGCTGGGACCACTCAAATTGAAGGAAGCATCCACAATGCCTACTTTTCTCTGATTGAGAAGGCAGAACACTTCGTATACATTGAGgtttgtgcctttttctttgaccttttagatttgagttcttaacttcagtatttttttacggataatgatctgaaactggagttttccatgcattattcta...

Basic information

species Zea mays
transcript GRMZM2G066485_T02
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G066485_T01 (Zea mays), 5'ss of exon 12
lower sequence: LOC_Os05g29050.1 (Oryza sativa), 5'ss of exon 12
TGTCGGTCAATGGTCAGCTGGGACCACTCAAATTGAAGGAAGCATCCACAATGCCTACTTTTCTCTGATTGAGAAGGCAGAACACTTCGTATACATTGAGgtttg-----tgcctttttctttgaccttttagatttgagttcttaact--------tcagtatttttttacggataatgatctgaaactggagttttccatgcattattcta
||| ||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |||||||| ||||| ||||||||||| || ||||| || |||||  |     ||| ||| | ||  || |   | |||  | |||| |||         | ||||  ||||    |||||||||||  || |   |||                 
TGTTGGTCAATGGTCAGCTGGAACCACTCAAATCGAAGGAAGCATCCACAATGCCTATTTTTCTCTTATTGAAAAGGCAGAACATTTTGTATATATCGAGgtccgcgttttgcatttattttaaacatcaaaaattcaatttctaaacaatagtagattagtaggttttactagataatgatctttaaataatgttcagt-------------

upper sequence: GRMZM2G066485_T01 (Zea mays), 5'ss of exon 12
lower sequence: GLYMA15G16270.1 (Glycine max), 5'ss of exon 13
TGTCGGTCAATGGTCAGCTGGGACCACTCAAATTGAAGGAAGCATCCACAATGCCTACTTTTCTCTGATTGAGAAGGCAGAACACTTCGTATACATTGAGgttt-----gtgcctttttctttgaccttt--tagatttgagttcttaacttcagtatttttttacggataatgatctgaaactggagttttccatgcattattcta
 ||  |||||||||| ||||| || | ||||| |||||  ||||||||||||||||| |  ||||| |||||||| || ||| ||||| | ||||||||||| |        | |  | | |  | || |  |  |||  |  | ||         ||  |||| | ||| || ||   |||  |  ||||| |||   |||     
CGTAAGTCAATGGTCTGCTGGAACAAGTCAAACTGAAGAGAGCATCCACAATGCCTATTGCTCTCTTATTGAGAAAGCTGAATACTTCATCTACATTGAGgtattaaataaacttcctccgtatatctctgttgaattacaactttttgaagattgatggttttgcagatgattataccaaaa-gtggttttacat-tgtta-----

upper sequence: GRMZM2G066485_T01 (Zea mays), 5'ss of exon 12
lower sequence: GLYMA09G04620.1 (Glycine max), 5'ss of exon 13
TGTCGGTCAATGGTCAGCTGGGACCACTCAAATTGAAGGAAGCATCCACAATGCCTACTTTTCTCTGATTGAGAAGGCAGAACACTTCGTATACATTGAGgttt-----gtgcctttttctttgacctt--ttagatttgagttcttaacttcagtatttttttacggataatgatctgaaactggagttttccatgcattattcta
|||  |||||||||| ||||| || | |||||  ||||  |||||||||||||| || |  ||||| |||||||| || ||| ||||| | ||||||||||| |        | |  | |||  | ||   ||  |||  | || ||         ||  |||| | ||| || ||   |||   |  ||| || ||  |||     
TGTGAGTCAATGGTCTGCTGGAACAAGTCAAACCGAAGAGAGCATCCACAATGCTTATTGCTCTCTTATTGAGAAAGCTGAATACTTCATCTACATTGAGgtattaaataaacttcctccttgtatctccgttgaattacaattttttgaagattgatggttttgcagatgattataccaaaagtggttttaccttg--tta-----

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211303557|gb|FL306494.1|FL306494
EST:     ATGCCTACTTTTCTCTGATTGAGAAGGCAGAACACTTCGTATACATTGAG                         AATCAATTTTTCATATCGGGTCTGTCAGGAGATGATACGATTAAWAACCGC
genomic: ATGCCTACTTTTCTCTGATTGAGAAGGCAGAACACTTCGTATACATTGAGgtttgtgcct ... cgttttgcagAATCAATTTTTCATATCGGGTCTGTCAGGAGATGATACGATTAAAAACCGC